// Gmsh - Copyright (C) 1997-2025 C. Geuzaine, J.-F. Remacle
//
// See the LICENSE.txt file in the Gmsh root directory for license information.
// Please report all issues on https://gitlab.onelab.info/gmsh/gmsh/issues.
//
// Contributed by Arthur Bawin

#include "automaticMeshSizeField.h"
#include "GModel.h"
#include "GRegion.h"
#include "GFace.h"
#include "GEntity.h"
#include "MVertex.h"
#include "MTetrahedron.h"
#include "SBoundingBox3d.h"
#include "GmshMessage.h"
#include "curvature.h"
#include "Numeric.h"
#include "robustPredicates.h"

#include <queue>
#include <inttypes.h>

#ifdef HAVE_HXT
extern "C" {
#include "hxt_tools.h"
#include "hxt_edge.h"
#include "hxt_bbox.h"
#include "hxt_tetMesh.h"
#include "hxt_tetUtils.h"
#include "hxt_tetFlag.h"
#include "hxt_tetDelaunay.h"
#include "hxt_tetRefine.h"
}
#endif

#if defined(HAVE_P4EST)
#include <p8est_search.h>
#endif

#if defined(HAVE_HXT) && defined(HAVE_P4EST)
static inline void norme2(double v[3], double *norme2)
{
  *norme2 = sqrt(v[0] * v[0] + v[1] * v[1] + v[2] * v[2]);
}

static inline bool isPoint(double x1, double y1, double z1, double x2,
                           double y2, double z2, double tol)
{
  return (fabs(x2 - x1) < tol && fabs(y2 - y1) < tol && fabs(z2 - z1) < tol);
}

void writeNodalCurvature(double *nodalCurvature, int size, const char *filename)
{
  FILE *f = fopen(filename, "w");
  if(f == nullptr) {
    printf("Erreur : fileOutput == NULL\n");
    exit(-1);
  }

  for(int i = 0; i < size; ++i) {
    fprintf(f, "%f %f %f - %d\n", nodalCurvature[6 * i + 0],
            nodalCurvature[6 * i + 1], nodalCurvature[6 * i + 2], i);
    fprintf(f, "%f %f %f\n", nodalCurvature[6 * i + 3],
            nodalCurvature[6 * i + 4], nodalCurvature[6 * i + 5]);
  }
  fclose(f);
}

static HXTStatus getAllFacesOfAllRegions(std::vector<GRegion *> &regions,
                                         HXTMesh *m,
                                         std::vector<GFace *> &allFaces)
{
  std::set<GFace *, GEntityPtrLessThan> allFacesSet;
  if(m) {
    m->brep.numVolumes = regions.size();
    HXT_CHECK(hxtAlignedMalloc(&m->brep.numSurfacesPerVolume,
                               m->brep.numVolumes * sizeof(uint32_t)));
  }
  uint32_t to_alloc = 0;
  for(std::size_t i = 0; i < regions.size(); i++) {
    std::vector<GFace *> const &f = regions[i]->faces();
    std::vector<GFace *> const &f_e = regions[i]->embeddedFaces();
    if(m) {
      m->brep.numSurfacesPerVolume[i] = f.size() + f_e.size();
      to_alloc += m->brep.numSurfacesPerVolume[i];
    }
    allFacesSet.insert(f.begin(), f.end());
    allFacesSet.insert(f_e.begin(), f_e.end());
  }
  allFaces.insert(allFaces.begin(), allFacesSet.begin(), allFacesSet.end());

  if(!m) return HXT_STATUS_OK;

  HXT_CHECK(
    hxtAlignedMalloc(&m->brep.surfacesPerVolume, to_alloc * sizeof(uint32_t)));

  uint32_t counter = 0;
  for(std::size_t i = 0; i < regions.size(); i++) {
    std::vector<GFace *> const &f = regions[i]->faces();
    std::vector<GFace *> const &f_e = regions[i]->embeddedFaces();
    for(size_t j = 0; j < f.size(); j++)
      m->brep.surfacesPerVolume[counter++] = f[j]->tag();
    for(size_t j = 0; j < f_e.size(); j++)
      m->brep.surfacesPerVolume[counter++] = f_e[j]->tag();
  }

  // printf("volume 0 has %d faces\n",m->brep.numSurfacesPerVolume[0]);
  // for (int
  // i=0;i<m->brep.numSurfacesPerVolume[0];i++)printf("%d",m->brep.surfacesPerVolume[i]);
  // printf("\n");

  return HXT_STATUS_OK;
}

static HXTStatus getAllEdgesOfAllFaces(std::vector<GFace *> &faces, HXTMesh *m,
                                       std::vector<GEdge *> &allEdges)
{
  if(m) {
    m->brep.numSurfaces = faces.size();
    HXT_CHECK(hxtAlignedMalloc(&m->brep.numCurvesPerSurface,
                               m->brep.numSurfaces * sizeof(uint32_t)));
  }
  uint32_t to_alloc = 0;

  std::set<GEdge *, GEntityPtrLessThan> allEdgesSet;
  for(std::size_t i = 0; i < faces.size(); i++) {
    std::vector<GEdge *> const &f = faces[i]->edges();
    std::vector<GEdge *> const &f_e = faces[i]->embeddedEdges();
    if(m) {
      m->brep.numCurvesPerSurface[i] = f.size() + f_e.size();
      to_alloc += m->brep.numCurvesPerSurface[i];
    }
    allEdgesSet.insert(f.begin(), f.end());
    allEdgesSet.insert(f_e.begin(), f_e.end());
  }
  allEdges.insert(allEdges.begin(), allEdgesSet.begin(), allEdgesSet.end());

  if(!m) return HXT_STATUS_OK;

  HXT_CHECK(
    hxtAlignedMalloc(&m->brep.curvesPerSurface, to_alloc * sizeof(uint32_t)));

  uint32_t counter = 0;
  for(std::size_t i = 0; i < faces.size(); i++) {
    std::vector<GEdge *> const &f = faces[i]->edges();
    std::vector<GEdge *> const &f_e = faces[i]->embeddedEdges();
    for(size_t j = 0; j < f.size(); j++)
      m->brep.curvesPerSurface[counter++] = f[j]->tag();
    for(size_t j = 0; j < f_e.size(); j++)
      m->brep.curvesPerSurface[counter++] = f_e[j]->tag();
  }
  return HXT_STATUS_OK;
}

HXTStatus Gmsh2Hxt(std::vector<GRegion *> &regions, HXTMesh *m,
                   std::map<MVertex *, uint32_t> &v2c,
                   std::vector<MVertex *> &c2v);

HXTStatus Gmsh2Hxt(std::vector<GFace *> &faces, HXTMesh *m,
                   std::map<MVertex *, uint32_t> &v2c,
                   std::vector<MVertex *> &c2v)
{
  std::vector<GEdge *> edges;
  HXT_CHECK(getAllEdgesOfAllFaces(faces, m, edges));
  std::set<MVertex *> all;

  uint64_t ntri = 0;
  uint64_t nedg = 0;

  for(size_t j = 0; j < edges.size(); j++) {
    GEdge *ge = edges[j];
    nedg += ge->lines.size();
    for(size_t i = 0; i < ge->lines.size(); i++) {
      all.insert(ge->lines[i]->getVertex(0));
      all.insert(ge->lines[i]->getVertex(1));
    }
  }

  for(size_t j = 0; j < faces.size(); j++) {
    GFace *gf = faces[j];
    ntri += gf->triangles.size();
    for(size_t i = 0; i < gf->triangles.size(); i++) {
      all.insert(gf->triangles[i]->getVertex(0));
      all.insert(gf->triangles[i]->getVertex(1));
      all.insert(gf->triangles[i]->getVertex(2));
    }
  }

  m->vertices.num = m->vertices.size = all.size();
  HXT_CHECK(
    hxtAlignedMalloc(&m->vertices.coord, 4 * m->vertices.num * sizeof(double)));

  size_t count = 0;
  c2v.resize(all.size());
  // for(auto it = all.begin(); it != all.end(); it++)
  // {
  //   m->vertices.coord[4 * count + 0] = (*it)->x();
  //   m->vertices.coord[4 * count + 1] = (*it)->y();
  //   m->vertices.coord[4 * count + 2] = (*it)->z();
  //   m->vertices.coord[4 * count + 3] = 0.0;
  //   v2c[*it] = count;
  //   c2v[count++] = *it;
  // }
  for(MVertex *v : all) {
    m->vertices.coord[4 * count + 0] = v->x();
    m->vertices.coord[4 * count + 1] = v->y();
    m->vertices.coord[4 * count + 2] = v->z();
    m->vertices.coord[4 * count + 3] = 0;
    // if(CTX::instance()->mesh.lcFromPoints) { // size on embedded points in
    // volume
    //   auto it = vlc.find(v);
    //   if(it != vlc.end())
    //     m->vertices.coord[4 * count + 3] = it->second;
    // }
    v2c[v] = count;
    c2v[count++] = v;
  }
  all.clear();

  m->lines.num = m->lines.size = nedg;
  uint64_t index = 0;

  HXT_CHECK(
    hxtAlignedMalloc(&m->lines.node, (m->lines.num) * 2 * sizeof(uint32_t)));
  HXT_CHECK(
    hxtAlignedMalloc(&m->lines.color, (m->lines.num) * sizeof(uint32_t)));

  for(size_t j = 0; j < edges.size(); j++) {
    GEdge *ge = edges[j];
    for(size_t i = 0; i < ge->lines.size(); i++) {
      m->lines.node[2 * index + 0] = v2c[ge->lines[i]->getVertex(0)];
      m->lines.node[2 * index + 1] = v2c[ge->lines[i]->getVertex(1)];
      m->lines.color[index] = ge->tag();
      index++;
    }
  }

  m->triangles.num = m->triangles.size = ntri;
  HXT_CHECK(hxtAlignedMalloc(&m->triangles.node,
                             (m->triangles.num) * 3 * sizeof(uint32_t)));
  HXT_CHECK(hxtAlignedMalloc(&m->triangles.color,
                             (m->triangles.num) * sizeof(uint32_t)));

  index = 0;
  for(size_t j = 0; j < faces.size(); j++) {
    GFace *gf = faces[j];
    for(size_t i = 0; i < gf->triangles.size(); i++) {
      m->triangles.node[3 * index + 0] = v2c[gf->triangles[i]->getVertex(0)];
      m->triangles.node[3 * index + 1] = v2c[gf->triangles[i]->getVertex(1)];
      m->triangles.node[3 * index + 2] = v2c[gf->triangles[i]->getVertex(2)];
      m->triangles.color[index] = gf->tag();
      index++;
    }
  }
  return HXT_STATUS_OK;
}

// HXTStatus Gmsh2Hxt(std::vector<GRegion *> &regions, HXTMesh *m,
// std::map<MVertex *, uint32_t> &v2c, std::vector<MVertex *> &c2v);

// HXTStatus Gmsh2Hxt(std::vector<GFace *> &faces, HXTMesh *m, std::map<MVertex
// *, uint32_t> &v2c, std::vector<MVertex *> &c2v);

HXTStatus Gmsh2HxtLocal(std::vector<GFace *> &faces, HXTMesh *m,
                        std::map<MVertex *, uint32_t> &v2c,
                        std::vector<MVertex *> &c2v)
{
  std::vector<GEdge *> edges;
  HXT_CHECK(getAllEdgesOfAllFaces(faces, m, edges));
  std::set<MVertex *> all;

  uint64_t ntri = 0;
  uint64_t nedg = 0;

  for(size_t j = 0; j < edges.size(); j++) {
    GEdge *ge = edges[j];
    nedg += ge->lines.size();
    for(size_t i = 0; i < ge->lines.size(); i++) {
      // all.insert(ge->lines[i]->getVertex(0));
      // all.insert(ge->lines[i]->getVertex(1));
    }
  }

  for(size_t j = 0; j < faces.size(); j++) {
    GFace *gf = faces[j];
    ntri += gf->triangles.size();
    for(size_t i = 0; i < gf->triangles.size(); i++) {
      all.insert(gf->triangles[i]->getVertex(0));
      all.insert(gf->triangles[i]->getVertex(1));
      all.insert(gf->triangles[i]->getVertex(2));
    }
  }

  // printf("%d vertices %d triangles\n",all.size(),ntri);

  m->vertices.num = m->vertices.size = all.size();
  HXT_CHECK(
    hxtAlignedMalloc(&m->vertices.coord, 4 * m->vertices.num * sizeof(double)));

  size_t count = 0;
  c2v.resize(all.size());
  for(auto it = all.begin(); it != all.end(); it++) {
    m->vertices.coord[4 * count + 0] = (*it)->x();
    m->vertices.coord[4 * count + 1] = (*it)->y();
    m->vertices.coord[4 * count + 2] = (*it)->z();
    m->vertices.coord[4 * count + 3] = 0.0;
    v2c[*it] = count;
    c2v[count++] = *it;
  }
  all.clear();

  m->lines.num = m->lines.size = nedg;
  uint64_t index = 0;

  HXT_CHECK(
    hxtAlignedMalloc(&m->lines.node, (m->lines.num) * 2 * sizeof(uint32_t)));
  HXT_CHECK(
    hxtAlignedMalloc(&m->lines.color, (m->lines.num) * sizeof(uint32_t)));

  for(size_t j = 0; j < edges.size(); j++) {
    GEdge *ge = edges[j];
    for(size_t i = 0; i < ge->lines.size(); i++) {
      m->lines.node[2 * index + 0] = v2c[ge->lines[i]->getVertex(0)];
      m->lines.node[2 * index + 1] = v2c[ge->lines[i]->getVertex(1)];
      m->lines.color[index] = ge->tag();
      index++;
    }
  }

  m->triangles.num = m->triangles.size = ntri;
  HXT_CHECK(hxtAlignedMalloc(&m->triangles.node,
                             (m->triangles.num) * 3 * sizeof(uint32_t)));
  HXT_CHECK(hxtAlignedMalloc(&m->triangles.color,
                             (m->triangles.num) * sizeof(uint32_t)));

  index = 0;
  for(size_t j = 0; j < faces.size(); j++) {
    GFace *gf = faces[j];
    for(size_t i = 0; i < gf->triangles.size(); i++) {
      m->triangles.node[3 * index + 0] = v2c[gf->triangles[i]->getVertex(0)];
      m->triangles.node[3 * index + 1] = v2c[gf->triangles[i]->getVertex(1)];
      m->triangles.node[3 * index + 2] = v2c[gf->triangles[i]->getVertex(2)];
      m->triangles.color[index] = gf->tag();
      index++;
    }
  }
  return HXT_STATUS_OK;
}

HXTStatus Gmsh2HxtGlobal(std::vector<GFace *> &faces, HXTMesh *m,
                         std::map<MVertex *, uint32_t> &v2c,
                         std::vector<MVertex *> &c2v)
{
  std::vector<GEdge *> edges;
  HXT_CHECK(getAllEdgesOfAllFaces(faces, m, edges));
  std::set<MVertex *> all;

  uint64_t cumsum = 0;
  uint64_t cumsumNoEdges = 0;
  for(size_t j = 0; j < edges.size(); j++) {
    GEdge *ge = edges[j];
    cumsum += ge->lines.size();
    for(size_t i = 0; i < ge->lines.size(); i++) {
      all.insert(ge->lines[i]->getVertex(0));
      all.insert(ge->lines[i]->getVertex(1));
    }
  }

  for(size_t j = 0; j < faces.size(); j++) {
    GFace *gf = faces[j];
    cumsum += gf->triangles.size();
    cumsumNoEdges += gf->triangles.size();
    for(size_t i = 0; i < gf->triangles.size(); i++) {
      all.insert(gf->triangles[i]->getVertex(0));
      all.insert(gf->triangles[i]->getVertex(1));
      all.insert(gf->triangles[i]->getVertex(2));
    }
  }

  c2v.resize(cumsum);
  all.clear();

  cumsum = 0;
  size_t count_c2v2 = 0;
  for(size_t j = 0; j < faces.size(); ++j) {
    // all propre à la face
    GFace *gf = faces[j];
    cumsum += gf->triangles.size();
    for(size_t i = 0; i < gf->triangles.size(); i++) {
      all.insert(gf->triangles[i]->getVertex(0));
      all.insert(gf->triangles[i]->getVertex(1));
      all.insert(gf->triangles[i]->getVertex(2));
    }
    size_t count = 0;
    for(auto it = all.begin(); it != all.end(); it++) {
      v2c[*it] = count++;
      c2v[count_c2v2++] = *it;
    }
    all.clear();
  }

  return HXT_STATUS_OK;
}

/* ======================================================================================
   Functions from hxt_octree
   ======================================================================================
 */

static bool rtreeCallback(uint64_t id, void *ctx)
{
  std::vector<uint64_t> *vec = reinterpret_cast<std::vector<uint64_t> *>(ctx);
  vec->push_back(id);
  return true;
}

/* Create a p4est connectivity structure for the given bounding box. */
static p4est_connectivity_t *
p8est_connectivity_new_cube(ForestOptions *forestOptions)
{
  const p4est_topidx_t num_vertices = 8;
  const p4est_topidx_t num_trees = 1;
  const p4est_topidx_t num_ett = 0;
  const p4est_topidx_t num_ctt = 0;

  double centreX = (forestOptions->bbox[0] + forestOptions->bbox[3]) / 2.0;
  double centreY = (forestOptions->bbox[1] + forestOptions->bbox[4]) / 2.0;
  double centreZ = (forestOptions->bbox[2] + forestOptions->bbox[5]) / 2.0;
  double cX = (forestOptions->bbox[3] - forestOptions->bbox[0]) / 2.0;
  double cY = (forestOptions->bbox[4] - forestOptions->bbox[1]) / 2.0;
  double cZ = (forestOptions->bbox[5] - forestOptions->bbox[2]) / 2.0;

  double scalingFactor =
    1.3; // The octree is this times bigger than the surface mesh's bounding box
  double c = scalingFactor * fmax(fmax(cX, cY), cZ);

  // TODO : Compute any bounding box, not necessarily aligned with the axes
  const double vertices[8 * 3] = {
    centreX - c, centreY - c, centreZ - c, centreX + c, centreY - c,
    centreZ - c, centreX - c, centreY + c, centreZ - c, centreX + c,
    centreY + c, centreZ - c, centreX - c, centreY - c, centreZ + c,
    centreX + c, centreY - c, centreZ + c, centreX - c, centreY + c,
    centreZ + c, centreX + c, centreY + c, centreZ + c,
  };
  const p4est_topidx_t tree_to_vertex[1 * 8] = {0, 1, 2, 3, 4, 5, 6, 7};
  const p4est_topidx_t tree_to_tree[1 * 6] = {0, 0, 0, 0, 0, 0};
  const int8_t tree_to_face[1 * 6] = {0, 1, 2, 3, 4, 5};

  return p4est_connectivity_new_copy(num_vertices, num_trees, 0, 0, vertices,
                                     tree_to_vertex, tree_to_tree, tree_to_face,
                                     nullptr, &num_ett, nullptr, nullptr,
                                     nullptr, &num_ctt, nullptr, nullptr);
}

static p4est_connectivity_t *
p8est_connectivity_new_square(ForestOptions *forestOptions)
{
  const p4est_topidx_t num_vertices = 8;
  const p4est_topidx_t num_trees = 1;
  const p4est_topidx_t num_ett = 0;
  const p4est_topidx_t num_ctt = 0;

  double centreX = (forestOptions->bbox[0] + forestOptions->bbox[3]) / 2.0;
  double centreY = (forestOptions->bbox[1] + forestOptions->bbox[4]) / 2.0;
  double cX = (forestOptions->bbox[3] - forestOptions->bbox[0]) / 2.0;
  double cY = (forestOptions->bbox[4] - forestOptions->bbox[1]) / 2.0;

  double scalingFactor =
    1.5; // The octree is this times bigger than the surface mesh's bounding box
  double c = scalingFactor * fmax(cX, cY);

  // TODO : Compute any bounding box, not necessarily aligned with the axes
  const double vertices[8 * 3] = {
    centreX - c, centreY - c, 0.0, centreX + c, centreY - c, 0.0,
    centreX - c, centreY + c, 0.0, centreX + c, centreY + c, 0.0,
    centreX - c, centreY - c, 0.0, centreX + c, centreY - c, 0.0,
    centreX - c, centreY + c, 0.0, centreX + c, centreY + c, 0.0,
  };
  const p4est_topidx_t tree_to_vertex[1 * 8] = {0, 1, 2, 3, 4, 5, 6, 7};
  const p4est_topidx_t tree_to_tree[1 * 6] = {0, 0, 0, 0, 0, 0};
  const int8_t tree_to_face[1 * 6] = {0, 1, 2, 3, 4, 5};

  return p4est_connectivity_new_copy(num_vertices, num_trees, 0, 0, vertices,
                                     tree_to_vertex, tree_to_tree, tree_to_face,
                                     nullptr, &num_ett, nullptr, nullptr,
                                     nullptr, &num_ctt, nullptr, nullptr);
}
static inline double bulkSize(double x, double y, double z, double hBulk)
{
  return hBulk;
}

/* Fills xyz[] with the coordinates of the center of the given tree cell. */
static inline void getCellCenter(p4est_t *p4est, p4est_topidx_t which_tree,
                                 p4est_quadrant_t *q, double xyz[3])
{
  p4est_qcoord_t half_length = P4EST_QUADRANT_LEN(q->level) / 2;
  p4est_qcoord_to_vertex(p4est->connectivity, which_tree, q->x + half_length,
                         q->y + half_length, q->z + half_length, xyz);
}

/* Fills min[] & max[] with the coordinates of the cell viewed as a bounding
 * box. */
static inline void getCellBBox(p4est_t *p4est, p4est_topidx_t which_tree,
                               p4est_quadrant_t *q, double min[3],
                               double max[3])
{
  p4est_qcoord_t length = P4EST_QUADRANT_LEN(q->level);
  p4est_qcoord_to_vertex(p4est->connectivity, which_tree, q->x, q->y, q->z,
                         min);
  p4est_qcoord_to_vertex(p4est->connectivity, which_tree, q->x + length,
                         q->y + length, q->z + length, max);
}

/* Fills h with the dimension of the given cell (length of a cell edge). */
static void getCellSize(p4est_t *p4est, p4est_topidx_t which_tree,
                        p4est_quadrant_t *q, double *h)
{
  double min[3], max[3];
  p4est_qcoord_t length = P4EST_QUADRANT_LEN(q->level);
  p4est_qcoord_to_vertex(p4est->connectivity, which_tree, q->x, q->y, q->z,
                         min);
  p4est_qcoord_to_vertex(p4est->connectivity, which_tree, q->x + length,
                         q->y + length, q->z + length, max);
  // All cell edges are supposed to be the same length h (-:
  *h = fmax(max[0] - min[0], fmax(max[1] - min[1], max[2] - min[2]));
}

/* Callback used by p4est to initialize the user_data on each tree cell. */
static inline void initializeCell(p4est_t *p4est, p4est_topidx_t which_tree,
                                  p4est_quadrant_t *q)
{
  ForestOptions *forestOptions = (ForestOptions *)p4est->user_pointer;
  size_data_t *data = (size_data_t *)q->p.user_data;

  double center[3];
  getCellCenter(p4est, which_tree, q, center);

  // Set cell size
  data->size = forestOptions->sizeFunction(center[0], center[1], center[2],
                                           forestOptions->hbulk);
  // data->M = SMetric3(1. / (forestOptions->hbulk * forestOptions->hbulk));
  data->M = SMetric3(1. / (0.4 * 0.4));

  // Set size gradient to zero
  for(int i = 0; i < P4EST_DIM; ++i) data->ds[i] = 0.0;
  // Set cell dimension (edge length)
  getCellSize(p4est, which_tree, q, &(data->h));

  data->hasIntersection = false;
}

/* Creates (allocates) the forestOptions structure. */
HXTStatus forestOptionsCreate(ForestOptions **forestOptions)
{
  HXT_CHECK(hxtAlignedMalloc(forestOptions, sizeof(ForestOptions)));
  if(*forestOptions == nullptr) return HXT_ERROR(HXT_STATUS_OUT_OF_MEMORY);
  return HXT_STATUS_OK;
}

/* Destroys forestOptions. */
HXTStatus forestOptionsDelete(ForestOptions **forestOptions)
{
  HXT_CHECK(hxtFree(forestOptions));
  return HXT_STATUS_OK;
}

HXTStatus loadGlobalData(ForestOptions *forestOptions, const char *filename)
{
  FILE *f = fopen(filename, "r");
  char buf[BUFSIZ] = {""};
  if(fgets(buf, BUFSIZ, f) == nullptr) {
    return HXT_ERROR(HXT_STATUS_FILE_CANNOT_BE_OPENED);
  }
  sscanf(buf, "%lf %lf", &forestOptions->hmin, &forestOptions->hmax);
  fclose(f);
  Msg::Info("Loaded global data from %s", filename);
  Msg::Info("Min size = %f", forestOptions->hmin);
  Msg::Info("Max size = %f", forestOptions->hmax);
  return HXT_STATUS_OK;
}

/* Creates a (sequential) forest structure by loading a p4est file. */
HXTStatus forestLoad(Forest **forest, const char *forestFile,
                     const char *dataFile, ForestOptions *forestOptions)
{
  if(forestFile == nullptr) return HXT_ERROR(HXT_STATUS_FILE_CANNOT_BE_OPENED);

  HXT_CHECK(hxtMalloc(forest, sizeof(Forest)));
  if(*forest == nullptr) return HXT_ERROR(HXT_STATUS_OUT_OF_MEMORY);

  HXT_CHECK(loadGlobalData(forestOptions, dataFile));

  p4est_connectivity_t *connect;
  sc_MPI_Comm mpicomm = sc_MPI_COMM_WORLD;
  int load_data = true;
  int autopartition = true;
  int broadcasthead = true;

  (*forest)->p4est = p4est_load_ext(forestFile, mpicomm, sizeof(size_data_t),
                                    load_data, autopartition, broadcasthead,
                                    (void *)forestOptions, &connect);

  ForestOptions *fO = (ForestOptions *)(*forest)->p4est->user_pointer;
  if(fO == nullptr) return HXT_ERROR(HXT_STATUS_OUT_OF_MEMORY);

  return HXT_STATUS_OK;
}

/* Creates a (sequential) forest structure from the forestOptions information.
   The forest is not refined; it consists of the root octant. */
HXTStatus forestCreate(int argc, char **argv, Forest **forest,
                       const char *filename, ForestOptions *forestOptions)
{
  HXT_CHECK(hxtMalloc(forest, sizeof(Forest)));
  if(*forest == nullptr) return HXT_ERROR(HXT_STATUS_OUT_OF_MEMORY);

  int mpiret;
  sc_MPI_Comm mpicomm;
  p4est_connectivity_t *connect;

  /* Initialize MPI; see sc_mpi.h.
   * If configure --enable-mpi is given these are true MPI calls.
   * Else these are dummy functions that simulate a single-processor run. */
  mpiret = sc_MPI_Init(&argc, &argv);
  SC_CHECK_MPI(mpiret);
  mpicomm = sc_MPI_COMM_WORLD;

  /* These functions are optional.  If called they store the MPI rank as a
   * static variable so subsequent global p4est log messages are only issued
   * from processor zero.  Here we turn off most of the logging; see sc.h. */
  // sc_init(mpicomm, 1, 1, NULL, SC_LP_ESSENTIAL);
  // p4est_init(NULL, SC_LP_PRODUCTION);

  /* Create a connectivity from the bounding box */
  if(forestOptions->dim == 3) {
    connect = p8est_connectivity_new_cube(forestOptions);
  }
  else {
    connect = p8est_connectivity_new_square(forestOptions);
  }

  if(connect == nullptr) return HXT_ERROR(HXT_STATUS_OUT_OF_MEMORY);

  // #ifdef P4EST_WITH_METIS
  //   //  Use metis (if p4est is compiled with the flag '--with-metis') to
  //   //  * reorder the connectivity for better parititioning of the forest
  //   //  * across processors.
  //   p4est_connectivity_reorder(mpicomm, 0, conn, P4EST_CONNECT_FACE);
  // #endif /* P4EST_WITH_METIS */

  // Assign bulkSize callback if no sizeFunction is specified.
  if(forestOptions->sizeFunction == nullptr)
    forestOptions->sizeFunction = &bulkSize;

  (*forest)->p4est = p4est_new(mpicomm, connect, sizeof(size_data_t),
                               initializeCell, (void *)forestOptions);
  (*forest)->forestOptions = forestOptions;

  return HXT_STATUS_OK;
}

/* Deletes the forest structure. */
HXTStatus forestDelete(Forest **forest)
{
  /* Destroy the p4est structure. */
  p4est_connectivity_destroy((*forest)->p4est->connectivity);
  p4est_destroy((*forest)->p4est);
  /* Verify that allocations internal to p4est and sc do not leak memory.
   * This should be called if sc_init () has been called earlier. */
  // sc_finalize();
  /* This is standard MPI programs.  Without --enable-mpi, this is a dummy. */
  int mpiret = sc_MPI_Finalize();
  SC_CHECK_MPI(mpiret);

  HXT_CHECK(hxtFree(forest));

  return HXT_STATUS_OK;
}

/* ========================================================================================================
   FOREST REFINEMENT
   ========================================================================================================
 */

/* Callback used by octreeRefineToBulkSize; returns 1 if the cells need
 * refinement, 0 otherwise. */
static inline int refineToBulkSizeCallback(p4est_t *p4est,
                                           p4est_topidx_t which_tree,
                                           p4est_quadrant_t *q)
{
  ForestOptions *forestOptions = (ForestOptions *)p4est->user_pointer;
  size_data_t *data = (size_data_t *)q->p.user_data;
  return data->h > forestOptions->hbulk;
}

/* Used by curvatureRefine; returns 1 if the cell should be
   refined according to the surface mesh curvature, 0 otherwise. */
static int curvatureRefineCallback(p4est_t *p4est, p4est_topidx_t which_tree,
                                   p4est_quadrant_t *q)
{
  ForestOptions *forestOptions = (ForestOptions *)p4est->user_pointer;
  double h;
  getCellSize(p4est, which_tree, q, &h);
  double center[3];
  getCellCenter(p4est, which_tree, q, center);

  if(forestOptions->dim == 3) {
    double min[3], max[3];
    getCellBBox(p4est, which_tree, q, min, max);

    std::vector<uint64_t> candidates;
    forestOptions->triRTree->Search(min, max, rtreeCallback, &candidates);

    if(!candidates.empty()) {
      double kmax = -1.e22; // To get min curvature size
      double kmin = 1.e22;
      double hf = DBL_MAX; // To get min feature size
      for(auto tri = candidates.begin(); tri != candidates.end(); ++tri) {
        for(int i = 0; i < 3; ++i) {
          int node =
            forestOptions->mesh->triangles.node[(size_t)3 * (*tri) + i];

          double *v1 = forestOptions->nodalCurvature + 6 * node;
          double *v2 = forestOptions->nodalCurvature + 6 * node + 3;

          double k1, k2;
          norme2(v1, &k1);
          norme2(v2, &k2);

          kmax = fmax(kmax, fmax(k1, k2));
          kmin = fmin(kmin, fmin(k1, k2));

          hf = fmin(hf, (*forestOptions->featureSizeAtVertices)[node]);
        }
      }

      // There is curvature and/or feature size : the cell size should
      // accurately represent the surface and the feature size, so as not
      // propagate small feature size far from the feature.
      // Cell is refined according to the chosen density of nodes.
      double hc = 2 * M_PI / (forestOptions->nodePerTwoPi * kmax);
      double nElemPerCell = 2;

      if(h > fmin(hc / nElemPerCell, hf) && h >= forestOptions->hmin) {
        return 1;
      }
      else {
        return 0;
      }
    }
    else { // candidates.empty()
      // If the cell has no intersection with the surface mesh, it is not
      // refined.
      return 0;
    }
  }
  else {
    // 2D curvature refinement is still a work in progress
    // double kmax = -1.e22;
    // double x, y;
    // bool inbox;

    // // Calculer kmax sur toutes les courbes
    // int n = 10;
    // double par[n];
    // for(uint16_t i = 0; i < n; ++i) par[i] = i*2.*M_PI/n;

    // for(uint16_t i = 0; i < (*forestOptions->curvFunctions).size(); ++i){
    //   for(uint16_t j = 0; j < n; ++j){
    //     x = (*forestOptions->xFunctions)[i](par[j]);
    //     y = (*forestOptions->yFunctions)[i](par[j]);
    //     inbox  = (x <= center[0] + h/2.) && (x >= center[0] - h/2.);
    //     inbox &= (y <= center[1] + h/2.) && (y >= center[1] - h/2.);
    //     if(inbox) kmax = fmax(kmax,
    //     fabs((*forestOptions->curvFunctions)[i](par[j])));
    //   }
    // }

    // if(kmax > 0){
    //   if(kmax < 1e-3){
    //     return 0;
    //   } else{
    //     double hc = 2*M_PI/(forestOptions->nodePerTwoPi * kmax);
    //     int nElemPerCell = 1;
    //      if(h > hc/nElemPerCell && h >= forestOptions->hmin){
    //       return 1;
    //     } else{
    //       return 0;
    //     }
    //   }
    // } else{
    return 0;
    // }
  }
}

static int coarsenCallback(p4est_t *p4est, p4est_topidx_t which_tree,
                           p4est_quadrant_t *children[])
{
  ForestOptions *forestOptions = (ForestOptions *)p4est->user_pointer;

  for(int n = 0; n < P4EST_CHILDREN; ++n) {
    size_data_t *data = (size_data_t *)children[n]->p.user_data;

    double min[3], max[3];
    getCellBBox(p4est, which_tree, children[n], min, max);

    std::vector<uint64_t> candidates;
    forestOptions->triRTree->Search(min, max, rtreeCallback, &candidates);

    // Cells are not merged if any one of them touches the surface mesh.
    if(!candidates.empty()) return 0;
    // Cells are not merged if the resulting cell size is > than hbulk.
    if(2.0 * data->h > forestOptions->hbulk) return 0;
  }

  return 1;
}

static void assignSizeAfterRefinement(p4est_iter_volume_info_t *info,
                                      void *user_data)
{
  p4est_t *p4est = info->p4est;
  p4est_quadrant_t *q = info->quad;
  p4est_topidx_t which_tree = info->treeid;
  size_data_t *data = (size_data_t *)q->p.user_data;
  ForestOptions *forestOptions = (ForestOptions *)user_data;

  double h;
  getCellSize(p4est, which_tree, q, &h);
  double center[3];
  getCellCenter(p4est, which_tree, q, center);

  if(forestOptions->dim == 3) {
    double min[3], max[3];
    getCellBBox(p4est, which_tree, q, min, max);

    std::vector<uint64_t> candidates;
    forestOptions->triRTree->Search(min, max, rtreeCallback, &candidates);

    if(!candidates.empty()) {
      double kmax = -1.0e22;
      double hf = DBL_MAX;
      for(auto tri = candidates.begin(); tri != candidates.end(); ++tri) {
        for(int i = 0; i < 3; ++i) {
          int node =
            forestOptions->mesh->triangles.node[(size_t)3 * (*tri) + i];
          double *v1 = forestOptions->nodalCurvature + 6 * node;
          double *v2 = forestOptions->nodalCurvature + 6 * node + 3;
          double k1, k2;
          norme2(v1, &k1);
          norme2(v2, &k2);
          kmax = fmax(kmax, fmax(k1, k2));
          hf = fmin(hf, (*forestOptions->featureSizeAtVertices)[node]);
        }
      }
      data->size =
        fmax(forestOptions->hmin,
             fmin(forestOptions->hmax,
                  fmin(hf, 2 * M_PI / (forestOptions->nodePerTwoPi * kmax))));
      // data->size = kmax;
    }
    else {
      data->size =
        fmax(forestOptions->hmin, fmin(forestOptions->hmax, data->size));
    }
  }
  else {
    // 2D
    // double kmax = -1.e22;
    // double x, y;
    // bool inbox;

    // // Calculer kmax sur toutes les courbes
    // int n = 10;
    // double par[n];
    // for(uint16_t i = 0; i < n; ++i) par[i] = i*2.*M_PI/n;

    // for(uint16_t i = 0; i < (*forestOptions->curvFunctions).size(); ++i){
    //   for(uint16_t j = 0; j < n; ++j){
    //     x = (*forestOptions->xFunctions)[i](par[j]);
    //     y = (*forestOptions->yFunctions)[i](par[j]);
    //     inbox  = (x <= center[0] + h/2.) && (x >= center[0] - h/2.);
    //     inbox &= (y <= center[1] + h/2.) && (y >= center[1] - h/2.);
    //     if(inbox) kmax = fmax(kmax,
    //     fabs((*forestOptions->curvFunctions)[i](par[j])));
    //   }
    // }

    // if(kmax > 0){
    //   double hc = 2*M_PI/(forestOptions->nodePerTwoPi * kmax);
    //   data->size = fmin(data->size, hc);
    // }
  }
}

#if 0 // TODO remove once this is used
static void assignSizeAfterRefinementAniso(p4est_iter_volume_info_t * info, void *user_data){
  p4est_t            *p4est = info->p4est;
  p4est_quadrant_t   *q = info->quad;
  p4est_topidx_t      which_tree = info->treeid;
  size_data_t        *data = (size_data_t *) q->p.user_data;
  ForestOptions   *forestOptions = (ForestOptions *) user_data;

  double h;
  getCellSize(p4est, which_tree, q, &h);
  double center[3];
  getCellCenter(p4est, which_tree, q, center);

  // SVector3 t1(1.0,0.0,0.0);
  // SVector3 t2(0.0,1.0,0.0);
  // SVector3 t3(0.0,0.0,1.0);
  // double h3 = 0.1;
  // double h2 = 0.1 + 3.*fabs(center[1]);
  // double h1 = 0.1 + 60.*fabs(center[1]);
  // data->M = SMetric3(1.0/(h1*h1), 1.0/(h2*h2), 1.0/(h3*h3), t1, t2, t3);

  if(forestOptions->dim == 3){
    double min[3], max[3];
    getCellBBox(p4est, which_tree, q, min, max);

    std::vector<uint64_t> candidates;
    forestOptions->triRTree->Search(min, max, rtreeCallback, &candidates);

    SVector3 t1, t2, n;

    if(!candidates.empty()){
      double kmax1 = -1.0e22;
      double kmax2 = -1.0e22;
      double hf = DBL_MAX;
      for(auto tri = candidates.begin(); tri != candidates.end(); ++tri){
        for(int i = 0; i < 3; ++i){
          int node = forestOptions->mesh->triangles.node[(size_t) 3*(*tri)+i];
          double *v1 = forestOptions->nodalCurvature + 6*node;
          double *v2 = forestOptions->nodalCurvature + 6*node + 3;

          // double x = forestOptions->mesh->vertices.coord[(size_t) 4*node+0];
          // double y = forestOptions->mesh->vertices.coord[(size_t) 4*node+1];
          // double z = forestOptions->mesh->vertices.coord[(size_t) 4*node+2];

          t1 = SVector3(v1[0], v1[1], v1[2]);
          t1 = t1.unit();
          t2 = SVector3(v2[0], v2[1], v2[2]);
          t2 = t2.unit();
          n = crossprod(t1,t2);
          n = n.unit();

          data->t1 = t1;
          data->t2 = t2;
          data->n = n;

          // fprintf(forestOptions->file2, "SL(%f,%f,%f, %f,%f,%f){%f,%f};\n",
          //   x, y, z, x+t1[0], y+t1[1], z+t1[2], 1.0, 1.0);
          // fprintf(forestOptions->file2, "SL(%f,%f,%f, %f,%f,%f){%f,%f};\n",
          //   x, y, z, x+t2[0], y+t2[1], z+t2[2], 1.0, 1.0);
          // fprintf(forestOptions->file2, "SL(%f,%f,%f, %f,%f,%f){%f,%f};\n",
          //   x, y, z, x+n[0], y+n[1], z+n[2], 1.0, 1.0);

          double k1, k2;
          norme2(v1, &k1);
          norme2(v2, &k2);
          kmax1 = fmax(kmax1,k1);
          kmax2 = fmax(kmax2,k2);
          hf = fmin(hf, (*forestOptions->featureSizeAtVertices)[node]);
        }
      }
      double hc1 = fmax(forestOptions->hmin, fmin(forestOptions->hmax, 2*M_PI/(forestOptions->nodePerTwoPi * kmax1)) );
      double hc2 = fmax(forestOptions->hmin, fmin(forestOptions->hmax, 2*M_PI/(forestOptions->nodePerTwoPi/4.0 * kmax2)) );
              hf = fmax(forestOptions->hmin, fmin(forestOptions->hmax, hf));
      // SMetric3 m(1.0/(hf*hf), 1.0/(hc1*hc1), 1.0/(hc2*hc2), n, t1, t2);
      SMetric3 m(1.0/(hf*hf), 1.0/(hc1*hc1), 1.0/(hc2*hc2), n, t1, t2);
      data->M = m;
      data->size = fmax(forestOptions->hmin, fmin(forestOptions->hmax, fmin(hf, 2*M_PI/(forestOptions->nodePerTwoPi * fmax(kmax1,kmax2) )) ));
    }
    else{
      data->size = fmax(forestOptions->hmin, fmin(forestOptions->hmax, data->size));
    }
  } else{
    // // 2D : To do
    // double kmax = -1.e22;
    // double x, y;
    // bool inbox;

    // // Calculer kmax sur toutes les courbes
    // int n = 10;
    // double par[n];
    // for(uint16_t i = 0; i < n; ++i) par[i] = i*2.*M_PI/n;

    // for(uint16_t i = 0; i < (*forestOptions->curvFunctions).size(); ++i){
    //   for(uint16_t j = 0; j < n; ++j){
    //     x = (*forestOptions->xFunctions)[i](par[j]);
    //     y = (*forestOptions->yFunctions)[i](par[j]);
    //     inbox  = (x <= center[0] + h/2.) && (x >= center[0] - h/2.);
    //     inbox &= (y <= center[1] + h/2.) && (y >= center[1] - h/2.);
    //     if(inbox) kmax = fmax(kmax, fabs((*forestOptions->curvFunctions)[i](par[j])));
    //   }
    // }

    // if(kmax > 0){
    //   double hc = 2*M_PI/(forestOptions->nodePerTwoPi * kmax);
    //   data->size = fmin(data->size, hc);
    // }
  }
}
#endif // TODO remove once this is used

HXTStatus forestRefine(Forest *forest)
{
  /* Refine recursively the tree until all cells' size is at most hbulk. */
  p4est_refine_ext(forest->p4est, 1, P4EST_QMAXLEVEL, refineToBulkSizeCallback,
                   initializeCell, nullptr);
  // Refine recursively with respect to the curvature
  p4est_refine_ext(forest->p4est, 1, P4EST_QMAXLEVEL, curvatureRefineCallback,
                   initializeCell, nullptr);
  // Coarsen
  p4est_coarsen_ext(forest->p4est, 1, 0, coarsenCallback, initializeCell,
                    nullptr);
  // Balance the octree to get 2:1 ratio between adjacent cells
  p4est_balance_ext(forest->p4est, P4EST_CONNECT_FACE, initializeCell, nullptr);
  // Assign size on the new cells

  forest->forestOptions->file1 = fopen("nonNorme.pos", "w");
  if(forest->forestOptions->file1 == nullptr)
    return HXT_ERROR(HXT_STATUS_FILE_CANNOT_BE_OPENED);
  forest->forestOptions->file2 = fopen("norme.pos", "w");
  if(forest->forestOptions->file2 == nullptr)
    return HXT_ERROR(HXT_STATUS_FILE_CANNOT_BE_OPENED);

  fprintf(forest->forestOptions->file1, "View \"nonNorme\" {\n");
  fprintf(forest->forestOptions->file2, "View \"norme\" {\n");

  p4est_iterate(forest->p4est, nullptr, forest->forestOptions,
                assignSizeAfterRefinement, nullptr, nullptr, nullptr);
  // p4est_iterate(forest->p4est, NULL, forest->forestOptions,
  // assignSizeAfterRefinementAniso, NULL, NULL, NULL);

  fprintf(forest->forestOptions->file1, "};");
  fclose(forest->forestOptions->file1);
  fprintf(forest->forestOptions->file2, "};");
  fclose(forest->forestOptions->file2);

  return HXT_STATUS_OK;
}

/* ========================================================================================================
   SIZE GRADIENT COMPUTATION & SMOOTHING
   ========================================================================================================
 */
static inline void resetCell(p4est_iter_volume_info_t *info, void *user_data)
{
  size_data_t *data = (size_data_t *)info->quad->p.user_data;
  // Reset gradient.
  data->ds[0] = 0.0;
  data->ds[1] = 0.0;
  data->ds[2] = 0.0;
}

static void computeGradientCenter(p4est_iter_face_info_t *info, void *user_data)
{
  p4est_iter_face_side_t *side[2];
  sc_array_t *sides = &(info->sides);
  size_data_t *data;
  size_data_t *data_opp;
  double s_avg, s_sum;
  int which_face_opp;
  // Index of current face on the opposite cell (0 if current is 1 and vice
  // versa).
  int iOpp;

  side[0] = p4est_iter_fside_array_index_int(sides, 0);
  side[1] = p4est_iter_fside_array_index_int(sides, 1);

  if(sides->elem_count == 2) {
    for(int i = 0; i < 2; i++) {
      iOpp = 1 - i;
      which_face_opp =
        side[iOpp]->face; /* 0,1 == -+x, 2,3 == -+y, 4,5 == -+z */

      // s_avg is the average size on the P4EST_HALF opposite cells
      s_avg = s_sum = 0;

      // Current cells are hanging
      if(side[i]->is_hanging) {
        for(int j = 0; j < P4EST_HALF; j++) {
          data = (size_data_t *)side[i]->is.hanging.quad[j]->p.user_data;
          s_avg += data->size;
        }
        s_sum = s_avg;
        s_avg /= P4EST_HALF;

        data_opp = (size_data_t *)side[iOpp]->is.full.quad->p.user_data;

        switch(which_face_opp) {
        case 0:
          data_opp->ds[0] -=
            0.5 * (s_avg - data_opp->size) / (data_opp->h / 2. + data->h / 2.);
          break;
        case 1:
          data_opp->ds[0] +=
            0.5 * (s_avg - data_opp->size) / (data_opp->h / 2. + data->h / 2.);
          break;
        case 2:
          data_opp->ds[1] -=
            0.5 * (s_avg - data_opp->size) / (data_opp->h / 2. + data->h / 2.);
          break;
        case 3:
          data_opp->ds[1] +=
            0.5 * (s_avg - data_opp->size) / (data_opp->h / 2. + data->h / 2.);
          break;
        case 4:
          data_opp->ds[2] -=
            0.5 * (s_avg - data_opp->size) / (data_opp->h / 2. + data->h / 2.);
          break;
        case 5:
          data_opp->ds[2] +=
            0.5 * (s_avg - data_opp->size) / (data_opp->h / 2. + data->h / 2.);
          break;
        }
      }
      // Current cell is full
      else {
        data = (size_data_t *)side[i]->is.full.quad->p.user_data;
        if(side[iOpp]->is_hanging) {
          // Current full - Opposite hanging
          double s_avg_opp = 0;
          for(int j = 0; j < P4EST_HALF; ++j) {
            data_opp =
              (size_data_t *)side[iOpp]->is.hanging.quad[j]->p.user_data;
            s_avg_opp += data_opp->size;
          }
          s_avg_opp /= P4EST_HALF;

          for(int j = 0; j < P4EST_HALF; ++j) {
            data_opp =
              (size_data_t *)side[iOpp]->is.hanging.quad[j]->p.user_data;
            switch(which_face_opp) {
            case 0:
              data_opp->ds[0] -= 0.5 * (data->size - data_opp->size) /
                                 (data_opp->h / 2. + data->h / 2.);
              break;
            case 1:
              data_opp->ds[0] += 0.5 * (data->size - data_opp->size) /
                                 (data_opp->h / 2. + data->h / 2.);
              break;
            case 2:
              data_opp->ds[1] -= 0.5 * (data->size - data_opp->size) /
                                 (data_opp->h / 2. + data->h / 2.);
              break;
            case 3:
              data_opp->ds[1] += 0.5 * (data->size - data_opp->size) /
                                 (data_opp->h / 2. + data->h / 2.);
              break;
            case 4:
              data_opp->ds[2] -= 0.5 * (data->size - data_opp->size) /
                                 (data_opp->h / 2. + data->h / 2.);
              break;
            case 5:
              data_opp->ds[2] += 0.5 * (data->size - data_opp->size) /
                                 (data_opp->h / 2. + data->h / 2.);
              break;
            }
          }
        }
        else {
          // Current full - Opposite full
          data_opp = (size_data_t *)side[iOpp]->is.full.quad->p.user_data;
          switch(which_face_opp) {
          case 0:
            data_opp->ds[0] -= 0.5 * (data->size - data_opp->size) /
                               (data_opp->h / 2. + data->h / 2.);
            break;
          case 1:
            data_opp->ds[0] += 0.5 * (data->size - data_opp->size) /
                               (data_opp->h / 2. + data->h / 2.);
            break;
          case 2:
            data_opp->ds[1] -= 0.5 * (data->size - data_opp->size) /
                               (data_opp->h / 2. + data->h / 2.);
            break;
          case 3:
            data_opp->ds[1] += 0.5 * (data->size - data_opp->size) /
                               (data_opp->h / 2. + data->h / 2.);
            break;
          case 4:
            data_opp->ds[2] -= 0.5 * (data->size - data_opp->size) /
                               (data_opp->h / 2. + data->h / 2.);
            break;
          case 5:
            data_opp->ds[2] += 0.5 * (data->size - data_opp->size) /
                               (data_opp->h / 2. + data->h / 2.);
            break;
          }
        }
      }
    }
  }
  // Nothing to do on the boundaries (0 flux)
}

HXTStatus forestComputeGradient(Forest *forest)
{
  // Iterate on each cell to reset size gradient and half lengths.
  p4est_iterate(forest->p4est, nullptr, nullptr, resetCell, nullptr, nullptr,
                nullptr);
  // Compute gradient at cell center using finite differences
  p4est_iterate(forest->p4est, nullptr, nullptr, nullptr, computeGradientCenter,
                nullptr, nullptr);

  return HXT_STATUS_OK;
}

static inline void getMaxGradient(p4est_iter_volume_info_t *info,
                                  void *user_data)
{
  p4est_quadrant_t *q = info->quad;
  size_data_t *data = (size_data_t *)q->p.user_data;
  double *gradMax = static_cast<double *>(user_data);
  gradMax[0] = SC_MAX(fabs(data->ds[0]), gradMax[0]);
  gradMax[1] = SC_MAX(fabs(data->ds[1]), gradMax[1]);
  gradMax[2] = SC_MAX(fabs(data->ds[2]), gradMax[2]);
}

static inline void getMinSize(p4est_iter_volume_info_t *info, void *user_data)
{
  p4est_quadrant_t *q = info->quad;
  size_data_t *data = (size_data_t *)q->p.user_data;
  double *minsize = (double *)user_data;
  *minsize = fmin(*minsize, data->size);
}

HXTStatus forestGetMaxGradient(Forest *forest, double *gradMax)
{
  p4est_iterate(forest->p4est, nullptr, (void *)gradMax, getMaxGradient,
                nullptr, nullptr, nullptr);
  return HXT_STATUS_OK;
}

HXTStatus forestGetMinSize(Forest *forest, double *minsize)
{
  double minSize = 1e22;
  p4est_iterate(forest->p4est, nullptr, (void *)&minSize, getMinSize, nullptr,
                nullptr, nullptr);
  *minsize = minSize;
  return HXT_STATUS_OK;
}

static void limitSize(p4est_iter_face_info_t *info, void *user_data)
{
  p4est_iter_face_side_t *side[2];
  sc_array_t *sides = &(info->sides);
  size_data_t *data;
  size_data_t *data_opp1;
  int which_dir;
  int which_face_opp;
  int iOpp;

  ForestOptions *forestOptions = (ForestOptions *)user_data;
  double alpha = forestOptions->gradation - 1.0;
  double tol = 1e-3;

  side[0] = p4est_iter_fside_array_index_int(sides, 0);
  side[1] = p4est_iter_fside_array_index_int(sides, 1);

  if(sides->elem_count == 2) {
    for(int i = 0; i < 2; ++i) {
      iOpp = 1 - i;
      which_dir = side[i]->face / 2; // Direction x (0), y (1) ou z(2)
      which_face_opp = side[iOpp]->face;

      if(side[i]->is_hanging) {
        // Current hanging - Opposes full
        data_opp1 = (size_data_t *)side[iOpp]->is.full.quad->p.user_data;

        for(int j = 0; j < P4EST_HALF; ++j) {
          data = (size_data_t *)side[i]->is.hanging.quad[j]->p.user_data;

          if(fabs(data->ds[which_dir]) > alpha + tol) {
            if(data->size > data_opp1->size) {
              switch(which_face_opp) {
              case 0:
                data->size = fmin(
                  data->size, data_opp1->size +
                                (alpha) * (data_opp1->h / 2. + data->h / 2.));
                break;
              case 1:
                data->size = fmin(
                  data->size, data_opp1->size +
                                (alpha) * (data_opp1->h / 2. + data->h / 2.));
                break;
              case 2:
                data->size = fmin(
                  data->size, data_opp1->size +
                                (alpha) * (data_opp1->h / 2. + data->h / 2.));
                break;
              case 3:
                data->size = fmin(
                  data->size, data_opp1->size +
                                (alpha) * (data_opp1->h / 2. + data->h / 2.));
                break;
              case 4:
                data->size = fmin(
                  data->size, data_opp1->size +
                                (alpha) * (data_opp1->h / 2. + data->h / 2.));
                break;
              case 5:
                data->size = fmin(
                  data->size, data_opp1->size +
                                (alpha) * (data_opp1->h / 2. + data->h / 2.));
                break;
              }
            }
            else {
              switch(which_face_opp) {
              case 0:
                data_opp1->size = fmin(
                  data_opp1->size,
                  data->size + (alpha) * (data_opp1->h / 2. + data->h / 2.));
                break;
              case 1:
                data_opp1->size = fmin(
                  data_opp1->size,
                  data->size + (alpha) * (data_opp1->h / 2. + data->h / 2.));
                break;
              case 2:
                data_opp1->size = fmin(
                  data_opp1->size,
                  data->size + (alpha) * (data_opp1->h / 2. + data->h / 2.));
                break;
              case 3:
                data_opp1->size = fmin(
                  data_opp1->size,
                  data->size + (alpha) * (data_opp1->h / 2. + data->h / 2.));
                break;
              case 4:
                data_opp1->size = fmin(
                  data_opp1->size,
                  data->size + (alpha) * (data_opp1->h / 2. + data->h / 2.));
                break;
              case 5:
                data_opp1->size = fmin(
                  data_opp1->size,
                  data->size + (alpha) * (data_opp1->h / 2. + data->h / 2.));
                break;
              }
            }
          } // if ds > alpha-1
        } // for j hanging
      } // if hanging
      else {
        data = (size_data_t *)side[i]->is.full.quad->p.user_data;

        if(fabs(data->ds[which_dir]) > alpha + tol) {
          if(side[iOpp]->is_hanging) {
            // Current full - Oppose hanging
            for(int j = 0; j < P4EST_HALF; ++j) {
              data_opp1 =
                (size_data_t *)side[iOpp]->is.hanging.quad[j]->p.user_data;
              if(data->size > data_opp1->size) {
                switch(which_face_opp) {
                case 0:
                  data->size = fmin(
                    data->size, data_opp1->size +
                                  (alpha) * (data_opp1->h / 2. + data->h / 2.));
                  break;
                case 1:
                  data->size = fmin(
                    data->size, data_opp1->size +
                                  (alpha) * (data_opp1->h / 2. + data->h / 2.));
                  break;
                case 2:
                  data->size = fmin(
                    data->size, data_opp1->size +
                                  (alpha) * (data_opp1->h / 2. + data->h / 2.));
                  break;
                case 3:
                  data->size = fmin(
                    data->size, data_opp1->size +
                                  (alpha) * (data_opp1->h / 2. + data->h / 2.));
                  break;
                case 4:
                  data->size = fmin(
                    data->size, data_opp1->size +
                                  (alpha) * (data_opp1->h / 2. + data->h / 2.));
                  break;
                case 5:
                  data->size = fmin(
                    data->size, data_opp1->size +
                                  (alpha) * (data_opp1->h / 2. + data->h / 2.));
                  break;
                }
              }
              else {
                switch(which_face_opp) {
                case 0:
                  data_opp1->size = fmin(
                    data_opp1->size,
                    data->size + (alpha) * (data_opp1->h / 2. + data->h / 2.));
                  break;
                case 1:
                  data_opp1->size = fmin(
                    data_opp1->size,
                    data->size + (alpha) * (data_opp1->h / 2. + data->h / 2.));
                  break;
                case 2:
                  data_opp1->size = fmin(
                    data_opp1->size,
                    data->size + (alpha) * (data_opp1->h / 2. + data->h / 2.));
                  break;
                case 3:
                  data_opp1->size = fmin(
                    data_opp1->size,
                    data->size + (alpha) * (data_opp1->h / 2. + data->h / 2.));
                  break;
                case 4:
                  data_opp1->size = fmin(
                    data_opp1->size,
                    data->size + (alpha) * (data_opp1->h / 2. + data->h / 2.));
                  break;
                case 5:
                  data_opp1->size = fmin(
                    data_opp1->size,
                    data->size + (alpha) * (data_opp1->h / 2. + data->h / 2.));
                  break;
                }
              }
            }
          }
          else {
            // Current full - Oppose full
            data_opp1 = (size_data_t *)side[iOpp]->is.full.quad->p.user_data;
            if(data->size > data_opp1->size) {
              switch(which_face_opp) {
              case 0:
                data->size = fmin(
                  data->size, data_opp1->size +
                                (alpha) * (data_opp1->h / 2. + data->h / 2.));
                break;
              case 1:
                data->size = fmin(
                  data->size, data_opp1->size +
                                (alpha) * (data_opp1->h / 2. + data->h / 2.));
                break;
              case 2:
                data->size = fmin(
                  data->size, data_opp1->size +
                                (alpha) * (data_opp1->h / 2. + data->h / 2.));
                break;
              case 3:
                data->size = fmin(
                  data->size, data_opp1->size +
                                (alpha) * (data_opp1->h / 2. + data->h / 2.));
                break;
              case 4:
                data->size = fmin(
                  data->size, data_opp1->size +
                                (alpha) * (data_opp1->h / 2. + data->h / 2.));
                break;
              case 5:
                data->size = fmin(
                  data->size, data_opp1->size +
                                (alpha) * (data_opp1->h / 2. + data->h / 2.));
                break;
              }
            }
            else {
              switch(which_face_opp) {
              case 0:
                data_opp1->size = fmin(
                  data_opp1->size,
                  data->size + (alpha) * (data_opp1->h / 2. + data->h / 2.));
                break;
              case 1:
                data_opp1->size = fmin(
                  data_opp1->size,
                  data->size + (alpha) * (data_opp1->h / 2. + data->h / 2.));
                break;
              case 2:
                data_opp1->size = fmin(
                  data_opp1->size,
                  data->size + (alpha) * (data_opp1->h / 2. + data->h / 2.));
                break;
              case 3:
                data_opp1->size = fmin(
                  data_opp1->size,
                  data->size + (alpha) * (data_opp1->h / 2. + data->h / 2.));
                break;
              case 4:
                data_opp1->size = fmin(
                  data_opp1->size,
                  data->size + (alpha) * (data_opp1->h / 2. + data->h / 2.));
                break;
              case 5:
                data_opp1->size = fmin(
                  data_opp1->size,
                  data->size + (alpha) * (data_opp1->h / 2. + data->h / 2.));
                break;
              }
            }
          }
        } // if gradient trop grand
      } // else
    }
  }
}

HXTStatus forestLimitSize(Forest *forest)
{
  p4est_iterate(forest->p4est, nullptr, (void *)forest->forestOptions, nullptr,
                limitSize, nullptr, nullptr);
  return HXT_STATUS_OK;
}

HXTStatus forestSizeSmoothing(Forest *forest)
{
  double gradMax[3], tol = 1e-3, gradLinf = 1e22;
  // double minSize = DBL_MAX;
  int iter = 0, nmax = 100;

  // HXT_CHECK(forestGetMinSize(forest, &minSize));
  // printf("Minsize before smoothing = %f\n", minSize);

  while(iter++ < nmax &&
        gradLinf > tol + forest->forestOptions->gradation - 1.0) {
    HXT_CHECK(forestComputeGradient(forest)); // Compute gradient
    HXT_CHECK(forestLimitSize(
      forest)); // Smooth large sizes to limit gradient to foresOptions->gradMax
    for(int i = 0; i < 3; ++i) gradMax[i] = -1e22; // Stopping criterion
    HXT_CHECK(forestGetMaxGradient(forest, gradMax));
    gradLinf = fmax(fabs(gradMax[0]), fmax(fabs(gradMax[1]), fabs(gradMax[2])));
    // HXT_CHECK(forestGetMinSize(forest, &minSize));
    // printf("Minsize = %f\n", minSize);
  }
  Msg::Info("Max gradient after smoothing : (%f - %f - %f)", fabs(gradMax[0]),
            fabs(gradMax[1]), fabs(gradMax[2]));
  return HXT_STATUS_OK;
}

/* ========================================================================================================
   SEARCH AND REPLACE
   ========================================================================================================
 */

static int searchAndAssignConstant(p4est_t *p4est, p4est_topidx_t which_tree,
                                   p4est_quadrant_t *q,
                                   p4est_locidx_t local_num, void *point)
{
  bool in_box, is_leaf = local_num >= 0;
  size_data_t *data = (size_data_t *)q->p.user_data;
  size_point_t *p = (size_point_t *)point;
  ForestOptions *forestOptions = (ForestOptions *)p4est->user_pointer;
  // We have to recompute the cell dimension h for the root (non leaves) octants
  // because it seems to be undefined. Otherwise it's contained in
  // q->p.user_data.
  double h, center[3];
  if(!is_leaf)
    getCellSize(p4est, which_tree, q, &h);
  else
    h = data->h;
  getCellCenter(p4est, which_tree, q, center);

  // double epsilon = 1e-13;
  // in_box  = (p->x < center[0] + h/2. + epsilon) && (p->x > center[0] - h/2. -
  // epsilon); in_box &= (p->y < center[1] + h/2. + epsilon) && (p->y >
  // center[1] - h/2. - epsilon); in_box &= (p->z < center[2] + h/2. + epsilon)
  // && (p->z > center[2] - h/2. - epsilon);
  in_box = (p->x <= center[0] + h / 2.) && (p->x >= center[0] - h / 2.);
  in_box &= (p->y <= center[1] + h / 2.) && (p->y >= center[1] - h / 2.);
  in_box &= (p->z <= center[2] + h / 2.) && (p->z >= center[2] - h / 2.);

  // A point can be on the exact boundary of two cells, hence we take the min.
  if(in_box && is_leaf) {
    p->size = fmin(p->size, data->size);
    p->size = fmax(forestOptions->hmin, fmin(forestOptions->hmax, p->size));
    p->isFound = true;
  }

  return in_box;
}

static int searchAndAssignConstantAniso(p4est_t *p4est,
                                        p4est_topidx_t which_tree,
                                        p4est_quadrant_t *q,
                                        p4est_locidx_t local_num, void *point)
{
  bool in_box, is_leaf = local_num >= 0;
  size_data_t *data = (size_data_t *)q->p.user_data;
  size_point_t *p = (size_point_t *)point;
  // ForestOptions *forestOptions = (ForestOptions *) p4est->user_pointer;
  // We have to recompute the cell dimension h for the root (non leaves) octants
  // because it seems to be undefined. Otherwise it's contained in
  // q->p.user_data.
  double h, center[3];
  if(!is_leaf)
    getCellSize(p4est, which_tree, q, &h);
  else
    h = data->h;
  getCellCenter(p4est, which_tree, q, center);

  double epsilon = 1e-13;
  in_box = (p->x < center[0] + h / 2. + epsilon) &&
           (p->x > center[0] - h / 2. - epsilon);
  in_box &= (p->y < center[1] + h / 2. + epsilon) &&
            (p->y > center[1] - h / 2. - epsilon);
  in_box &= (p->z < center[2] + h / 2. + epsilon) &&
            (p->z > center[2] - h / 2. - epsilon);
  // in_box  = (p->x <= center[0] + h/2.) && (p->x >= center[0] - h/2.);
  // in_box &= (p->y <= center[1] + h/2.) && (p->y >= center[1] - h/2.);
  // in_box &= (p->z <= center[2] + h/2.) && (p->z >= center[2] - h/2.);

  // A point can be on the exact boundary of two cells, hence we take the min.
  if(in_box && is_leaf) {
    // p->size = fmin(p->size, data->size);
    // p->size = fmax(forestOptions->hmin, fmin(forestOptions->hmax, p->size) );
    p->m = data->M;
    // p->m.print("p->m");
    p->isFound = true;
  }

  return in_box;
}

static int searchAndAssignLinear(p4est_t *p4est, p4est_topidx_t which_tree,
                                 p4est_quadrant_t *q, p4est_locidx_t local_num,
                                 void *point)
{
  bool in_box = false, is_leaf = local_num >= 0;
  size_data_t *data = (size_data_t *)q->p.user_data;
  size_point_t *p = (size_point_t *)point;
  ForestOptions *forestOptions = (ForestOptions *)p4est->user_pointer;
  // We have to recompute the cell dimension h for the root (non leaves) octants
  // because it seems to be undefined. Otherwise it's contained in
  // q->p.user_data.
  double h, center[3];
  // if(!is_leaf) getCellSize(p4est, which_tree, q, &h);
  // else h = data->h;
  getCellSize(p4est, which_tree, q, &h);
  getCellCenter(p4est, which_tree, q, center);

  double epsilon = 1e-10;
  // in_box  = (p->x < center[0] + h/2. + epsilon) && (p->x > center[0] - h/2. -
  // epsilon); in_box &= (p->y < center[1] + h/2. + epsilon) && (p->y >
  // center[1] - h/2. - epsilon); in_box &= (p->z < center[2] + h/2. + epsilon)
  // && (p->z > center[2] - h/2. - epsilon);

  // This misses some points...
  // in_box  = (p->x <= center[0] + h/2.) && (p->x >= center[0] - h/2.);
  // in_box &= (p->y <= center[1] + h/2.) && (p->y >= center[1] - h/2.);
  // in_box &= (p->z <= center[2] + h/2.) && (p->z >= center[2] - h/2.);

  SPoint3 C(center), P(p->x, p->y, p->z);
  SVector3 dir(C, P);
  SVector3 dx(1., 0., 0.);
  SVector3 dy(0., 1., 0.);
  SVector3 dz(0., 0., 1.);

  in_box = fabs(dot(dir, dx)) <= (h / 2. + epsilon) &&
           fabs(dot(dir, dy)) <= (h / 2. + epsilon) &&
           fabs(dot(dir, dz)) <= (h / 2. + epsilon);

  // A point can be on the exact boundary of two cells, hence we take the min.
  if(in_box && is_leaf) {
    p->size = fmin(p->size, data->size + data->ds[0] * (p->x - center[0]) +
                              data->ds[1] * (p->y - center[1]) +
                              data->ds[2] * (p->z - center[2]));
    p->size = fmax(forestOptions->hmin, fmin(forestOptions->hmax, p->size));
    p->isFound = true;
  }

  p->parcourus++;

  // if(is_leaf && !p->isFound && fabs(p->x) < 1e-4){
  // if(in_box && !p->isFound && fabs(p->x) < 1e-4){
  //   printf("Point (%4.16e,%4.16e,%4.16e)\n", p->x, p->y, p->z);
  //   printf("h = %4.16e, center = (%4.16e, %4.16e, %4.16e)\n", h, center[0],
  //   center[1], center[2]); printf("%4.16e <= x <= %4.16e (%d)\n",
  //   center[0]-h/2., center[0]+h/2., (p->x <= center[0] + h/2.) && (p->x >=
  //   center[0] - h/2.) ); printf("%4.16e <= y <= %4.16e (%d)\n",
  //   center[1]-h/2., center[1]+h/2., (p->y <= center[1] + h/2.) && (p->y >=
  //   center[1] - h/2.) ); printf("%4.16e <= z <= %4.16e (%d)\n",
  //   center[2]-h/2., center[2]+h/2., (p->z <= center[2] + h/2.) && (p->z >=
  //   center[2] - h/2.) );
  // }

  return in_box;
}

// static int replace(p4est_t * p4est, p4est_topidx_t which_tree,
// p4est_quadrant_t * q, p4est_locidx_t local_num, void *point){
//     bool in_box, is_leaf = local_num >= 0;
//     size_data_t  *data = (size_data_t *) q->p.user_data;
//     size_point_t *p    = (size_point_t *) point;
//     double h, center[3];
//     if(!is_leaf) getCellSize(p4est, which_tree, q, &h);
//     else h = data->h;
//     getCellCenter(p4est, which_tree, q, center);

//     in_box  = (p->x <= center[0] + h/2.) && (p->x >= center[0] - h/2.);
//     in_box &= (p->y <= center[1] + h/2.) && (p->y >= center[1] - h/2.);
//     in_box &= (p->z <= center[2] + h/2.) && (p->z >= center[2] - h/2.);

//     if(in_box && is_leaf){
//         data->size = fmin(data->size, p->size);
//     }

//     return in_box;
// }

/* Search for a single point in the tree structure and returns its size.
   See searchAndAssign for the detailed comments. */
HXTStatus forestSearchOne(Forest *forest, double x, double y, double z,
                          double *size, int linear)
{
  sc_array_t *points = sc_array_new_size(sizeof(size_point_t), 1);

  size_point_t *p = (size_point_t *)sc_array_index(points, 0);
  p->x = x;
  p->y = y;
  p->z = z;
  p->size = 1.0e22;
  p->isFound = false;
  p->parcourus = 0;

  if(linear) {
    p4est_search(forest->p4est, nullptr, searchAndAssignLinear, points);
  }
  else {
    p4est_search(forest->p4est, nullptr, searchAndAssignConstant, points);
  }

  if(!p->isFound) {
    Msg::Info("(%+.4f,%+.4f,%+.4f) was not found in the meshsize field 8-|", x,
              y, z);
    Msg::Info("Octants parcourus : %d\n", p->parcourus);
  }
  *size = p->size;

  sc_array_destroy(points);

  return HXT_STATUS_OK;
}

HXTStatus forestSearchOneAniso(Forest *forest, double x, double y, double z,
                               SMetric3 &m, int linear)
{
  sc_array_t *points = sc_array_new_size(sizeof(size_point_t), 1);

  size_point_t *p = (size_point_t *)sc_array_index(points, 0);
  p->x = x;
  p->y = y;
  p->z = z;
  p->m = SMetric3(1.0);
  p->isFound = false;

  p4est_search(forest->p4est, nullptr, searchAndAssignConstantAniso, points);

  if(!p->isFound)
    Msg::Info("Point (%f,%f,%f) n'a pas été trouvé dans l'octree 8-|", x, y, z);
  else
    m = p->m;

  // m.print("apres search");

  sc_array_destroy(points);

  return HXT_STATUS_OK;
}

// Not finished
HXTStatus hxtForestSearch(Forest *forest, std::vector<double> *x,
                          std::vector<double> *y, std::vector<double> *z,
                          std::vector<double> *size)
{
  // Array of size_point_t to search in the tree
  sc_array_t *points = sc_array_new_size(sizeof(size_point_t), (*x).size());
  size_point_t *p;

  for(size_t i = 0; i < (*x).size(); ++i) {
    p = (size_point_t *)sc_array_index(points, i);
    p->x = (*x)[i];
    p->y = (*y)[i];
    p->z = (*z)[i];
    p->size = -1.0;
  }

  // Search on all cells
  p4est_search(forest->p4est, nullptr, searchAndAssignLinear, points);

  // Get the sizes
  for(size_t i = 0; i < (*x).size(); ++i) {
    p = (size_point_t *)sc_array_index(points, i);
    (*size)[i] = p->size;
  }

  // Clean up
  sc_array_destroy(points);

  return HXT_STATUS_OK;
}

/* ========================================================================================================
   CLOSE SURFACES DETECTION
   ========================================================================================================
 */

// To quickly sort 4 integers
static void sort4(int *d)
{
#define SWAP(x, y)                                                             \
  if(d[y] < d[x]) {                                                            \
    int tmp = d[x];                                                            \
    d[x] = d[y];                                                               \
    d[y] = tmp;                                                                \
  }
  SWAP(0, 1);
  SWAP(2, 3);
  SWAP(0, 2);
  SWAP(1, 3);
  SWAP(1, 2);
#undef SWAP
}

// Checks whether two MTetrahedra have a common face without creating MFaces
// (slow) Returns the index of the common face in t1 if any, -1 otherwise
static int commonFaceTetFast(MTetrahedron *t1, MTetrahedron *t2)
{
  int t10 = t1->getVertex(0)->getNum();
  int t11 = t1->getVertex(1)->getNum();
  int t12 = t1->getVertex(2)->getNum();
  int t13 = t1->getVertex(3)->getNum();
  int t20 = t2->getVertex(0)->getNum();
  int t21 = t2->getVertex(1)->getNum();
  int t22 = t2->getVertex(2)->getNum();
  int t23 = t2->getVertex(3)->getNum();

  bool b0 = (t10 == t20) || (t10 == t21) || (t10 == t22) || (t10 == t23);
  bool b1 = (t11 == t20) || (t11 == t21) || (t11 == t22) || (t11 == t23);
  bool b2 = (t12 == t20) || (t12 == t21) || (t12 == t22) || (t12 == t23);
  bool b3 = (t13 == t20) || (t13 == t21) || (t13 == t22) || (t13 == t23);

  if(b0 + b1 + b2 + b3 < 3) { return -1; }
  else {
    int v1[4] = {t10, t11, t12, t13};
    int v1cpy[4] = {t10, t11, t12, t13};
    int v2[4] = {t20, t21, t22, t23};
    sort4(v1);
    sort4(v2);
    t10 = v1[0];
    t11 = v1[1];
    t12 = v1[2];
    t13 = v1[3];
    t20 = v2[0];
    t21 = v2[1];
    t22 = v2[2];
    t23 = v2[3];

    bool b00 = (t11 == t21) && (t12 == t22) && (t13 == t23);
    bool b01 = (t11 == t20) && (t12 == t22) && (t13 == t23);
    bool b02 = (t11 == t20) && (t12 == t21) && (t13 == t23);
    bool b03 = (t11 == t20) && (t12 == t21) && (t13 == t22);

    bool b10 = (t10 == t21) && (t12 == t22) && (t13 == t23);
    bool b11 = (t10 == t20) && (t12 == t22) && (t13 == t23);
    bool b12 = (t10 == t20) && (t12 == t21) && (t13 == t23);
    bool b13 = (t10 == t20) && (t12 == t21) && (t13 == t22);

    bool b20 = (t10 == t21) && (t11 == t22) && (t12 == t23);
    bool b21 = (t10 == t20) && (t11 == t22) && (t12 == t23);
    bool b22 = (t10 == t20) && (t11 == t21) && (t12 == t23);
    bool b23 = (t10 == t20) && (t11 == t21) && (t12 == t22);

    bool b30 = (t10 == t21) && (t11 == t22) && (t13 == t23);
    bool b31 = (t10 == t20) && (t11 == t22) && (t13 == t23);
    bool b32 = (t10 == t20) && (t11 == t21) && (t13 == t23);
    bool b33 = (t10 == t20) && (t11 == t21) && (t13 == t22);

    int missing = -1; // The vertex that is missing from the common face
    if(b00 || b01 || b02 || b03)
      missing = 0; // return 3;
    else if(b10 || b11 || b12 || b13)
      missing = 1; // return 2;
    else if(b20 || b21 || b22 || b23)
      missing = 3; // return 0;
    else if(b30 || b31 || b32 || b33)
      missing = 2; // return 1;

    if(missing >= 0) {
      if(v1cpy[0] == v1[missing])
        return 3;
      else if(v1cpy[1] == v1[missing])
        return 2;
      else if(v1cpy[2] == v1[missing])
        return 1;
      else if(v1cpy[3] == v1[missing])
        return 0;
    }

    return -1;
  }
}

// Only used to draw facets of the medial axis
static bool sortClockwise(SPoint3 a, SPoint3 b, SPoint3 center, SVector3 normal)
{
  // If dot(n, cross(A-C, B-C)) is positive, B is counterclockwise from A; if
  // it's negative, B is clockwise from A.
  SVector3 tmp = crossprod(SVector3(center, a), SVector3(center, b));
  return dot(normal, tmp) <= 0;
}

// Computes the medial axis of the geometry and assigns the feature size at
// vertices
HXTStatus featureSize(Forest *forest)
{
  HXTMesh *mesh = forest->forestOptions->mesh;
  int nLayersPerGap = forest->forestOptions->nodePerGap;
  double hmin = forest->forestOptions->hmin;
  double hmax = forest->forestOptions->hmax;

  std::vector<MVertex *> allVertices;
  std::vector<double> sizeAtVertices(mesh->vertices.num, DBL_MAX);
  for(size_t i = 0; i < mesh->vertices.num; ++i) {
    allVertices.push_back(new MVertex(mesh->vertices.coord[4 * i + 0],
                                      mesh->vertices.coord[4 * i + 1],
                                      mesh->vertices.coord[4 * i + 2]));
  }

  int firstVertex = allVertices[0]->getNum();

  // All tets
  uint64_t count = 0;
  std::vector<MTetrahedron *> allTets;
  std::vector<std::vector<uint64_t> > tetIncidents;
  std::vector<std::vector<MEdge> > edgIncidents;
  for(uint32_t i = 0; i < mesh->vertices.num; ++i) {
    std::vector<uint64_t> vTet;
    tetIncidents.push_back(vTet);
    std::vector<MEdge> vEdg;
    edgIncidents.push_back(vEdg);
  }

  for(size_t i = 0; i < mesh->tetrahedra.num; ++i) {
    if(mesh->tetrahedra.node[4 * i + 3] != HXT_GHOST_VERTEX) {
      allTets.push_back(
        new MTetrahedron(allVertices[mesh->tetrahedra.node[4 * i + 0]],
                         allVertices[mesh->tetrahedra.node[4 * i + 1]],
                         allVertices[mesh->tetrahedra.node[4 * i + 2]],
                         allVertices[mesh->tetrahedra.node[4 * i + 3]]));

      for(size_t j = 0; j < 4; ++j) {
        tetIncidents[mesh->tetrahedra.node[4 * i + j]].push_back(count);
      }
      for(size_t j = 0; j < 6; ++j) {
        MEdge e = allTets[count]->getEdge(j);
        edgIncidents[allTets[count]->getEdge(j).getVertex(0)->getNum() -
                     firstVertex]
          .push_back(e);
        edgIncidents[allTets[count]->getEdge(j).getVertex(1)->getNum() -
                     firstVertex]
          .push_back(e);
      }
      ++count;
    }
  }

  std::set<MEdge, MEdgeLessThan> axis;
  int elemDrawn = 0;

  FILE *file = fopen("medialAxis_toDraw.pos", "w");
  if(file == nullptr) return HXT_ERROR(HXT_STATUS_FILE_CANNOT_BE_OPENED);
  FILE *file2 = fopen("keptEdges.pos", "w");
  if(file2 == nullptr) return HXT_ERROR(HXT_STATUS_FILE_CANNOT_BE_OPENED);

  bool draw = true;
  if(draw) {
    fprintf(file, "View \"medialAxis\" {\n");
    fprintf(file2, "View \"keptEdges\" {\n");
  }

  int indFace;

  for(size_t i = 0; i < mesh->vertices.num; ++i) {
    // Pôle de p : circumcenter le plus loin parmi les tets incidents à p
    SPoint3 pole(0., 0., 0.), tmp(0., 0., 0.),
      p(mesh->vertices.coord[4 * i + 0], mesh->vertices.coord[4 * i + 1],
        mesh->vertices.coord[4 * i + 2]);
    double d = 0.;

    for(size_t j = 0; j < tetIncidents[i].size(); ++j) {
      tmp = allTets[tetIncidents[i][j]]->circumcenter();
      if(p.distance(tmp) > d) pole = tmp;
      d = fmax(d, p.distance(tmp));
    }

    // Pole vector
    SPoint3 vp = pole - p;
    double D = -(vp[0] * p[0] + vp[1] * p[1] + vp[2] * p[2]);
    SPoint3 p1(
      0., 0.,
      -D / vp[2]); // 2 points sur le plan qui passe par p et de normale vp
    SPoint3 p2(0., -D / vp[1], 0.);

    std::vector<MFace> up; // umbrella
    // Boucle sur les voronoi edges (paires de centres)
    double orientj, orientk;
    for(size_t j = 0; j < tetIncidents[i].size(); ++j) {
      uint64_t tetj = tetIncidents[i][j];
      SPoint3 cj = allTets[tetj]->circumcenter();
      for(size_t k = j; k < tetIncidents[i].size(); ++k) {
        uint64_t tetk = tetIncidents[i][k];
        if(tetj != tetk) {
          indFace = commonFaceTetFast(allTets[tetj], allTets[tetk]);
          if(indFace >= 0) {
            SPoint3 ck = allTets[tetk]->circumcenter();
            orientj = robustPredicates::orient3d((double *)p, (double *)p1,
                                                 (double *)p2, (double *)cj);
            orientk = robustPredicates::orient3d((double *)p, (double *)p1,
                                                 (double *)p2, (double *)ck);
            if(orientj * orientk < 0) {
              up.push_back(allTets[tetj]->getFace(indFace));
              // break; ?
            }
          }
        }
      }
    }

    double theta = M_PI / 8., rho = 8., maxAngle, minRatio, localAngle, alpha0,
           alpha1;
    std::vector<MEdge> checkedEdges;
    bool checked;
    for(size_t j = 0; j < edgIncidents[i].size();
        ++j) { // boucler sur les aretes incidentes à p

      MEdge e = edgIncidents[i][j];
      checked = false;
      for(size_t k = 0; k < checkedEdges.size(); ++k) {
        if(e == checkedEdges[k]) {
          checked = true;
          break;
        }
      }

      if(checked) { continue; }
      else {
        checkedEdges.push_back(e);
      }

      maxAngle = 0.0;
      minRatio = DBL_MAX;

      uint32_t v0 = e.getVertex(0)->getNum() - firstVertex;
      uint32_t v1 = e.getVertex(1)->getNum() - firstVertex;
      if(v0 == i || v1 == i) {
        for(size_t l = 0; l < up.size(); ++l) {
          // Angle condition
          localAngle = angle(e.tangent(), up[l].normal());
          localAngle = fmin(localAngle, fabs(M_PI - localAngle));
          maxAngle = fmax(maxAngle, localAngle);

          // Ratio condition
          MTriangle tri(up[l].getVertex(0), up[l].getVertex(1),
                        up[l].getVertex(2));
          minRatio = fmin(minRatio, e.length() / tri.getOuterRadius());
        }

        if(maxAngle < M_PI / 2. - theta || minRatio > rho) {
          double *n0 = forest->forestOptions->nodeNormals + 3 * v0;
          double *n1 = forest->forestOptions->nodeNormals + 3 * v1;
          alpha0 = angle(SVector3(n0), e.tangent());
          alpha1 = angle(SVector3(n1), e.tangent());

          if(fmin(alpha0, fabs(M_PI - alpha0)) < M_PI / 8. &&
             fmin(alpha1, fabs(M_PI - alpha1)) < M_PI / 8.) {
            // Add edge to the set (axis, though actually unused), modifiy size
            // at its extrmities and draw the dual facet
            auto ret = axis.insert(e);

            if(ret.second) {
              double h = e.length() / nLayersPerGap;
              h = fmax(h, hmin);
              h = fmin(h, hmax);
              sizeAtVertices[v0] = fmin(h, sizeAtVertices[v0]);
              sizeAtVertices[v1] = fmin(h, sizeAtVertices[v1]);

              fprintf(file2, "SL(%f,%f,%f, %f,%f,%f){%f,%f};\n",
                      e.getVertex(0)->x(), e.getVertex(0)->y(),
                      e.getVertex(0)->z(), e.getVertex(1)->x(),
                      e.getVertex(1)->y(), e.getVertex(1)->z(), e.length(),
                      e.length());

              if(draw) {
                // Turning around the edge to draw the facet
                std::vector<SPoint3> centers;
                for(size_t jj = 0; jj < tetIncidents[i].size(); ++jj) {
                  uint64_t tetj = tetIncidents[i][jj];
                  for(size_t b = 0; b < 6; ++b) {
                    if(allTets[tetj]->getEdge(b) == e)
                      centers.push_back(allTets[tetj]->circumcenter());
                  }
                }
                if(centers.size() > 2) {
                  // Center of the face
                  SPoint3 c(0., 0., 0.);
                  for(size_t a = 0; a < centers.size(); ++a) {
                    c += centers[a];
                  }
                  c /= centers.size();
                  SVector3 normal =
                    crossprod(SVector3(c, centers[0]), SVector3(c, centers[1]));
                  normal.normalize();
                  // Sort clockwise around center
                  sort(centers.begin(), centers.end(),
                       [c, normal](SPoint3 a, SPoint3 b) {
                         return sortClockwise(a, b, c, normal);
                       });
                  // Draw
                  for(size_t a = 1; a < centers.size() - 1; ++a) {
                    fprintf(file,
                            "ST(%f,%f,%f, %f,%f,%f, %f,%f,%f){%d,%d,%d};\n",
                            centers[0][0], centers[0][1], centers[0][2],
                            centers[a][0], centers[a][1], centers[a][2],
                            centers[a + 1][0], centers[a + 1][1],
                            centers[a + 1][2], 1, 1, 1);
                  }
                  fprintf(file, "ST(%f,%f,%f, %f,%f,%f, %f,%f,%f){%d,%d,%d};\n",
                          centers[0][0], centers[0][1], centers[0][2],
                          centers[centers.size() - 1][0],
                          centers[centers.size() - 1][1],
                          centers[centers.size() - 1][2], centers[1][0],
                          centers[1][1], centers[1][2], 1, 1, 1);
                  ++elemDrawn;
                }
              }
            } // if edge was inserted
          } // if edges does not have a too large angle with normals to its
            // extremities
        } // if edge passes conditions
      } // if i is an edge vertex
    } // for incident edges
  } // for vertices.num

  if(draw) {
    fprintf(file, "};");
    fclose(file);
  }

  // // Assign feature size in the octree cells
  // sc_array_t *points = sc_array_new_size(sizeof(size_point_t),
  // mesh->vertices.num); size_point_t *p_tmp; for(size_t i = 0; i <
  // mesh->vertices.num; ++i){
  //   p_tmp = (size_point_t *) sc_array_index(points, i);
  //   p_tmp->x = mesh->vertices.coord[(size_t) 4*i+0];
  //   p_tmp->y = mesh->vertices.coord[(size_t) 4*i+1];
  //   p_tmp->z = mesh->vertices.coord[(size_t) 4*i+2];
  //   p_tmp->size = sizeAtVertices[i];
  // }
  // p4est_search(forest->p4est, NULL, replace, points);

  for(size_t i = 0; i < mesh->vertices.num; ++i) {
    (*forest->forestOptions->featureSizeAtVertices)[i] = sizeAtVertices[i];
  }

  return HXT_STATUS_OK;
}

/* ========================================================================================================
   ESTIMATE NUMBER OF TETRAHEDRA IN THE VOLUME MESH
   ========================================================================================================
 */

static void elementEstimate(p4est_iter_volume_info_t *info, void *user_data)
{
  p4est_quadrant_t *q = info->quad;
  size_data_t *data = (size_data_t *)q->p.user_data;
  p4est_t *p4est = info->p4est;
  p4est_topidx_t which_tree = info->treeid;

  double center[3];
  getCellCenter(p4est, which_tree, q, center);

  double octantVolume = data->h * data->h * data->h;
  double tetVolume = data->size * data->size * data->size * sqrt(2) / 12.0;

  *((double *)user_data) += octantVolume / tetVolume;
}

HXTStatus hxtOctreeElementEstimation(Forest *forest, double *elemEstimate)
{
  p4est_iterate(forest->p4est, nullptr, (void *)elemEstimate, elementEstimate,
                nullptr, nullptr, nullptr);
  return HXT_STATUS_OK;
}

/* ========================================================================================================
   INTERPOLATION OF CURVATURE DIRECTIONS
   ========================================================================================================
 */

int intersections;

static void markIntersectingCells(p4est_iter_volume_info_t *info,
                                  void *user_data)
{
  ForestOptions *forestOptions = (ForestOptions *)info->p4est->user_pointer;
  size_data_t *data = (size_data_t *)info->quad->p.user_data;
  if(forestOptions->dim == 3) {
    double min[3], max[3];
    getCellBBox(info->p4est, info->treeid, info->quad, min, max);
    std::vector<uint64_t> candidates;
    forestOptions->triRTree->Search(min, max, rtreeCallback, &candidates);
    if(!candidates.empty()) {
      data->hasIntersection = true;
      ++intersections;
    }
  }
}

static void pushInterpolationData(p4est_iter_volume_info_t *info,
                                  void *user_data)
{
  size_data_t *data = (size_data_t *)info->quad->p.user_data;
  if(!data->hasIntersection) {
    p4est_quadrant_t *q = info->quad;
    p4est_t *p4est = info->p4est;
    p4est_topidx_t which_tree = info->treeid;

    std::vector<interpolation_data_t> *cellCenters =
      (std::vector<interpolation_data_t> *)user_data;

    double center[3];
    getCellCenter(p4est, which_tree, q, center);
    interpolation_data_t intdata = {
      {center[0], center[1], center[2]}, SVector3(0.), SVector3(0.), 0.};
    (*cellCenters).push_back(intdata);
  }
}

int cellCounter;

static void addDistanceContribution(p4est_iter_volume_info_t *info,
                                    void *user_data)
{
  size_data_t *data = (size_data_t *)info->quad->p.user_data;
  if(data->hasIntersection) {
    p4est_quadrant_t *q = info->quad;
    p4est_t *p4est = info->p4est;
    p4est_topidx_t which_tree = info->treeid;
    std::vector<interpolation_data_t> *cellCenters =
      (std::vector<interpolation_data_t> *)user_data;
    double center[3];
    getCellCenter(p4est, which_tree, q, center);
    double dist, xc, yc, zc;
    printf("working at cell %d/%d\n", cellCounter++, intersections);

    for(size_t i = 0; i < (*cellCenters).size(); ++i) {
      xc = (*cellCenters)[i].center[0];
      yc = (*cellCenters)[i].center[1];
      zc = (*cellCenters)[i].center[2];
      dist = sqrt((center[0] - xc) * (center[0] - xc) +
                  (center[1] - yc) * (center[1] - yc) +
                  (center[2] - zc) * (center[2] - zc));
      (*cellCenters)[i].denom += 1. / dist;
      (*cellCenters)[i].t1 += data->t1 * (1. / dist);
      (*cellCenters)[i].t2 += data->t2 * (1. / dist);
    }
  }
}

static void assignDirections(p4est_iter_volume_info_t *info, void *user_data)
{
  size_data_t *data = (size_data_t *)info->quad->p.user_data;
  if(!data->hasIntersection) {
    p4est_quadrant_t *q = info->quad;
    p4est_t *p4est = info->p4est;
    p4est_topidx_t which_tree = info->treeid;
    std::vector<interpolation_data_t> *cellCenters =
      (std::vector<interpolation_data_t> *)user_data;
    double center[3];
    getCellCenter(p4est, which_tree, q, center);

    double xc, yc, zc;
    for(size_t i = 0; i < (*cellCenters).size(); ++i) {
      xc = (*cellCenters)[i].center[0];
      yc = (*cellCenters)[i].center[1];
      zc = (*cellCenters)[i].center[2];
      if(fabs(center[0] - xc) < 1e-13 && fabs(center[1] - yc) < 1e-13 &&
         fabs(center[2] - zc) < 1e-13) {
        data->t1 = (*cellCenters)[i].t1 * (1. / (*cellCenters)[i].denom);
        data->t2 = (*cellCenters)[i].t2 * (1. / (*cellCenters)[i].denom);
        data->n = crossprod(data->t1, data->t2);
        data->n = data->n.unit();
        break;
      }
    }
  }
}

static void drawDirections(p4est_iter_volume_info_t *info, void *user_data)
{
  size_data_t *data = (size_data_t *)info->quad->p.user_data;
  ForestOptions *forestOptions = (ForestOptions *)info->p4est->user_pointer;
  p4est_quadrant_t *q = info->quad;
  p4est_t *p4est = info->p4est;
  p4est_topidx_t which_tree = info->treeid;

  double center[3];
  getCellCenter(p4est, which_tree, q, center);

  double x = center[0];
  double y = center[1];
  double z = center[2];
  fprintf(forestOptions->file3, "SL(%f,%f,%f, %f,%f,%f){%f,%f};\n", x, y, z,
          x + data->t1[0], y + data->t1[1], z + data->t1[2], 1.0, 1.0);
  fprintf(forestOptions->file3, "SL(%f,%f,%f, %f,%f,%f){%f,%f};\n", x, y, z,
          x + data->t2[0], y + data->t2[1], z + data->t2[2], 1.0, 1.0);
  fprintf(forestOptions->file3, "SL(%f,%f,%f, %f,%f,%f){%f,%f};\n", x, y, z,
          x + data->n[0], y + data->n[1], z + data->n[2], 1.0, 1.0);
}

HXTStatus forestInterpolateDirections(Forest *forest)
{
  intersections = 0;
  p4est_iterate(forest->p4est, nullptr, nullptr, markIntersectingCells, nullptr,
                nullptr, nullptr);

  std::vector<interpolation_data_t> cellCenters;
  cellCounter = 0;
  p4est_iterate(forest->p4est, nullptr, &cellCenters, pushInterpolationData,
                nullptr, nullptr, nullptr);
  p4est_iterate(forest->p4est, nullptr, &cellCenters, addDistanceContribution,
                nullptr, nullptr, nullptr);
  p4est_iterate(forest->p4est, nullptr, &cellCenters, assignDirections, nullptr,
                nullptr, nullptr);

  forest->forestOptions->file3 = fopen("directions.pos", "w");
  if(forest->forestOptions->file3 == nullptr)
    return HXT_ERROR(HXT_STATUS_FILE_CANNOT_BE_OPENED);

  fprintf(forest->forestOptions->file3, "View \"directions\" {\n");

  p4est_iterate(forest->p4est, nullptr, nullptr, drawDirections, nullptr,
                nullptr, nullptr);

  fprintf(forest->forestOptions->file3, "};");
  fclose(forest->forestOptions->file3);

  return HXT_STATUS_OK;
}

/* ========================================================================================================
   EXPORT
   ========================================================================================================
 */

HXTStatus saveGlobalData(Forest *forest, const char *filename)
{
  FILE *f = fopen(filename, "w");
  if(f == nullptr) return HXT_ERROR(HXT_STATUS_FILE_CANNOT_BE_OPENED);
  fprintf(f, "%f %f\n", forest->forestOptions->hmin,
          forest->forestOptions->hmax);
  fclose(f);
  Msg::Info("Saved global size field data to %s", filename);
  return HXT_STATUS_OK;
}

static void exportToHexCallback(p4est_iter_volume_info_t *info, void *user_data)
{
  p4est_quadrant_t *q = info->quad;
  size_data_t *data = (size_data_t *)q->p.user_data;
  p4est_t *p4est = info->p4est;
  p4est_topidx_t which_tree = info->treeid;

  FILE *f = (FILE *)user_data;
  double center[3], x[8], y[8], z[8];
  getCellCenter(p4est, which_tree, q, center);
  double h = data->h / 2.0, s = data->size, epsilon = 1e-12;
  x[0] = x[3] = x[4] = x[7] = center[0] - h - epsilon;
  x[1] = x[2] = x[5] = x[6] = center[0] + h + epsilon;
  y[0] = y[1] = y[4] = y[5] = center[1] - h - epsilon;
  y[2] = y[3] = y[6] = y[7] = center[1] + h + epsilon;
  z[0] = z[1] = z[2] = z[3] = center[2] - h - epsilon;
  z[4] = z[5] = z[6] = z[7] = center[2] + h + epsilon;

  fprintf(f,
          "SH(%f,%f,%f, %f,%f,%f, %f,%f,%f, %f,%f,%f,%f,%f,%f, %f,%f,%f, "
          "%f,%f,%f, %f,%f,%f){%f,%f,%f,%f,%f,%f,%f,%f};\n",
          x[0], y[0], z[0], x[1], y[1], z[1], x[2], y[2], z[2], x[3], y[3],
          z[3], x[4], y[4], z[4], x[5], y[5], z[5], x[6], y[6], z[6], x[7],
          y[7], z[7], s, s, s, s, s, s, s, s);
  // fprintf(f, "SH(%f,%f,%f, %f,%f,%f, %f,%f,%f, %f,%f,%f,%f,%f,%f, %f,%f,%f,
  // %f,%f,%f, %f,%f,%f){%d, %d, %d, %d, %d, %d, %d, %d};\n",
  //   x[0], y[0], z[0], x[1], y[1], z[1], x[2], y[2], z[2], x[3], y[3], z[3],
  //   x[4], y[4], z[4], x[5], y[5], z[5], x[6], y[6], z[6], x[7], y[7], z[7],
  //   data->hasIntersection, data->hasIntersection, data->hasIntersection,
  //   data->hasIntersection, data->hasIntersection, data->hasIntersection,
  //   data->hasIntersection, data->hasIntersection);
}

static void exportToQuadCallback(p4est_iter_volume_info_t *info,
                                 void *user_data)
{
  p4est_quadrant_t *q = info->quad;
  size_data_t *data = (size_data_t *)q->p.user_data;

  p4est_t *p4est = info->p4est;
  p4est_topidx_t which_tree = info->treeid;

  FILE *f = (FILE *)user_data;

  double center[3], x[8], y[8], z[8];
  getCellCenter(p4est, which_tree, q, center);

  double h = data->h / 2.0, s = data->size, epsilon = 1e-12;
  x[0] = x[3] = center[0] - h - epsilon;
  x[1] = x[2] = center[0] + h + epsilon;
  y[0] = y[1] = center[1] - h - epsilon;
  y[2] = y[3] = center[1] + h + epsilon;
  z[0] = z[1] = 0.0;
  z[2] = z[3] = 0.0;

  fprintf(f, "SQ(%f,%f,%f, %f,%f,%f, %f,%f,%f, %f,%f,%f){%f,%f,%f,%f};\n", x[0],
          y[0], z[0], x[1], y[1], z[1], x[2], y[2], z[2], x[3], y[3], z[3], s,
          s, s, s);
}

HXTStatus forestExport(Forest *forest, const char *forestFile)
{
  FILE *f = fopen(forestFile, "w");
  if(f == nullptr) return HXT_ERROR(HXT_STATUS_FILE_CANNOT_BE_OPENED);

  fprintf(f, "View \"sizeField\" {\n");
  if(forest->forestOptions->dim == 3) {
    p4est_iterate(forest->p4est, nullptr, (void *)f, exportToHexCallback,
                  nullptr, nullptr, nullptr);
  }
  else if(forest->forestOptions->dim == 2) {
    p4est_iterate(forest->p4est, nullptr, (void *)f, exportToQuadCallback,
                  nullptr, nullptr, nullptr);
  }
  fprintf(f, "};");
  fclose(f);
  return HXT_STATUS_OK;
}

HXTStatus forestSave(Forest *forest, const char *forestFile,
                     const char *dataFile)
{
  HXT_CHECK(saveGlobalData(forest, dataFile));
  p4est_save_ext(forestFile, forest->p4est, true, false);
  return HXT_STATUS_OK;
}

#endif

/* ======================================================================================
   End functions from hxt_octree
   ======================================================================================
 */

double automaticMeshSizeField::operator()(double X, double Y, double Z,
                                          GEntity *ge)
{
  double val = 1.e17;
#if defined(HAVE_HXT) && defined(HAVE_P4EST)
  HXTStatus s = forestSearchOne(forest, X, Y, Z, &val, true);
  if(s == HXT_STATUS_OK) { return val; }
  else
    Msg::Error("Cannot find point %g %g %g in the octree", X, Y, Z);
#else
  Msg::Error("Gmsh has to be compiled with HXT and P4EST for using "
             "automaticMeshSizeField");
#endif
  return val;
}

void automaticMeshSizeField::operator()(double X, double Y, double Z,
                                        SMetric3 &m, GEntity *ge)
{
#if defined(HAVE_HXT) && defined(HAVE_P4EST)
  HXTStatus s = forestSearchOneAniso(forest, X, Y, Z, m, false);
  if(fabs(m.determinant()) < 1e-13) m = SMetric3();
  m.print("m");
  if(s != HXT_STATUS_OK)
    Msg::Error("Cannot find point %g %g %g in the octree", X, Y, Z);
#else
  Msg::Error("Gmsh has to be compiled with HXT and P4EST for using "
             "automaticMeshSizeField");
#endif
}

automaticMeshSizeField::~automaticMeshSizeField()
{
#if defined(HAVE_HXT) && defined(HAVE_P4EST)
  if(forest) forestDelete(&forest);
  if(forestOptions) forestOptionsDelete(&forestOptions);
#endif
}

#if defined(HAVE_HXT) && defined(HAVE_P4EST)
HXTStatus automaticMeshSizeField::updateHXT()
{
  if(!updateNeeded) return HXT_STATUS_OK;

  if(forestOptions) HXT_CHECK(forestOptionsDelete(&forestOptions));
  if(forest) HXT_CHECK(forestDelete(&forest));

  updateNeeded = false;

  if(!_forestFile.empty()) {
    // Load .p4est file if given a valid file name
    Msg::Info("Loading size field from %s", _forestFile.c_str());
    HXT_CHECK(forestOptionsCreate(&forestOptions));
    size_t lastindex = _forestFile.find_last_of(".");
    std::string root = _forestFile.substr(0, lastindex);
    std::string forestFile = root + ".p4est";
    std::string dataFile = root + ".data";
    HXT_CHECK(
      forestLoad(&forest, forestFile.c_str(), dataFile.c_str(), forestOptions));
  }
  else {
    // Compute the size field otherwise
    int dim = GModel::current()->getDim();

    HXT_CHECK(forestOptionsCreate(&forestOptions));

    Msg::Info("Gradation = %f\n", _gradation);
    Msg::Info("Node density = %d\n", _nPointsPerCircle);
    if(dim == 3) {
      if(_nPointsPerGap > 0) {
        Msg::Info("Layers per gap = %d\n", _nPointsPerGap);
      }
      else {
        Msg::Info("Layers per gap = %d : not detecting features.\n",
                  _nPointsPerGap);
      }
    }

    // The bounding box of the mesh/model
    double bbox_vertices[6];

    RTree<uint64_t, double, 3> triRTree;
    HXTMesh *mesh;
    double *nodalCurvature;
    // double *nodeNormals;
    // std::vector<std::function<double(double)>> curvFunctions;
    // std::vector<std::function<double(double)>> xFunctions;
    // std::vector<std::function<double(double)>> yFunctions;

    int debug = true;

    GModel *gm = GModel::current();

    size_t numVertices = gm->getNumMeshVertices();
    HXT_CHECK(hxtMalloc(&nodalCurvature, 6 * numVertices * sizeof(double)));
    std::vector<double> nodeNormals;
    for(size_t i = 0; i < 6 * numVertices; ++i) { nodalCurvature[i] = NAN; }

    if(dim == 3) {
      // Get all faces of the model
      std::vector<GFace *> faces;
      std::vector<GRegion *> regions;
      for(auto it = GModel::current()->firstRegion();
          it != GModel::current()->lastRegion(); ++it) {
        regions.push_back(*it);
      }
      if(!regions.empty()) {
        HXT_CHECK(getAllFacesOfAllRegions(regions, nullptr, faces));
      }
      else {
        Msg::Info("No volume in the model : looping over faces instead.");
        for(auto it = GModel::current()->firstFace();
            it != GModel::current()->lastFace(); ++it) {
          faces.push_back(*it);
        }
      }

      if(regions.empty()) {
        Msg::Error("Erreur : Pas de volume dans le modèle.");
      }

      // Create global HXT mesh structure
      HXT_CHECK(hxtMeshCreate(&mesh));
      std::map<MVertex *, uint32_t> v2c;
      std::vector<MVertex *> c2v;
      Gmsh2Hxt(faces, mesh, v2c, c2v);
      // Gmsh2Hxt(regions, mesh, v2c, c2v);

      // if(!regions.empty()){
      //   Msg::Info("Volume found.");
      //   HXT_CHECK( getAllFacesOfAllRegions(regions, NULL, faces) );
      // } else{
      //   Msg::Info("No volume in the model : looping over faces instead.");
      //   regions[0] = new GRegion(GModel::current(),-1);
      //   for(auto it = GModel::current()->firstFace(); it !=
      //   GModel::current()->lastFace(); ++it){
      //     faces.push_back(*it);
      //     regions[0]->addEmbeddedFace(*it);
      //   }
      // }

      // // Create global HXT mesh structure
      // HXT_CHECK(hxtMeshCreate(&mesh));
      // std::map<MVertex *, uint32_t> v2c;
      // std::vector<MVertex *> c2v;
      // // Gmsh2Hxt(faces, mesh, v2c, c2v);
      // Gmsh2Hxt(regions, mesh, v2c, c2v);

      if(mesh->vertices.num == 0) {
        Msg::Error("Surface mesh is empty");
        HXT_CHECK(hxtMeshDelete(&mesh));
        Msg::Exit(1);
      }

      // HXT_CHECK(hxtMalloc(&nodalCurvature,6*mesh->vertices.num*sizeof(double)));
      // for(uint64_t i = 0; i < 6*mesh->vertices.num; ++i){ nodalCurvature[i] =
      // NAN; printf("%d\n",i);}

      // Create HXT mesh structure for each GFace
      std::vector<HXTMesh *> faceMeshes;
      for(size_t i = 0; i < faces.size(); ++i) {
        HXTMesh *meshFace;
        HXT_CHECK(hxtMeshCreate(&meshFace));
        std::vector<GFace *> oneFace;
        oneFace.push_back(faces[i]);
        std::map<MVertex *, uint32_t> v2cLoc;
        std::vector<MVertex *> c2vLoc;
        Gmsh2HxtLocal(oneFace, meshFace, v2cLoc, c2vLoc);
        faceMeshes.push_back(meshFace);
      }

      std::map<MVertex *, uint32_t> v2c2;
      std::vector<MVertex *> c2v2;
      Gmsh2HxtGlobal(faces, nullptr, v2c2, c2v2);

      size_t nVertices = 0;

      assert(faces.size() == faceMeshes.size());

      // Compute curvature of the faces
      int counter = 0;
      for(auto it = gm->firstFace(); it != gm->lastFace(); ++it) {
        HXTMesh *meshFace = faceMeshes[counter++];

        if(meshFace == nullptr) { Msg::Error("meshFace == NULL"); }

        GFace *gf = *it;
        std::map<MVertex *, int> nodeIndex;
        std::vector<SPoint3> nodes;
        std::vector<int> tris;
        std::vector<std::pair<SVector3, SVector3> > curv;
        for(std::size_t i = 0; i < gf->triangles.size(); i++) {
          MTriangle *t = gf->triangles[i];
          for(int j = 0; j < 3; j++) {
            MVertex *v = t->getVertex(j);
            if(nodeIndex.find(v) == nodeIndex.end()) {
              int idx = nodes.size();
              nodeIndex[v] = idx;
              nodes.push_back(v->point());
              tris.push_back(idx);
            }
            else {
              tris.push_back(nodeIndex[v]);
            }
          }
        }

        for(size_t i = 0; i < meshFace->vertices.num; ++i) {
          nodes[i] = SPoint3(meshFace->vertices.coord[(size_t)4 * i + 0],
                             meshFace->vertices.coord[(size_t)4 * i + 1],
                             meshFace->vertices.coord[(size_t)4 * i + 2]);
          // nodes[i] = gm->getMeshVertexByTag(i)
        }

        for(size_t i = 0; i < meshFace->triangles.num; ++i) {
          tris[3 * i + 0] = meshFace->triangles.node[3 * i + 0];
          tris[3 * i + 1] = meshFace->triangles.node[3 * i + 1];
          tris[3 * i + 2] = meshFace->triangles.node[3 * i + 2];
        }

        if(gf->triangles.empty()) {
          Msg::Info("Skipping curvature computation on face %d with 0 element",
                    counter - 1);
        }
        else {
          // Compute curvature of the face
          CurvatureRusinkiewicz(tris, nodes, curv);

          // Assemble curvature vectors of the face in global nodalCurvature
          // structure
          for(uint64_t i = 0; i < meshFace->vertices.num; ++i) {
            uint64_t nodeGlobal = v2c[c2v2[nVertices + i]];

            debug = true;
            if(debug) { // Check the vertex of the face and the global vertex
                        // are the same
              double x1, y1, z1, x2, y2, z2;
              x1 = meshFace->vertices.coord[(size_t)4 * i + 0];
              y1 = meshFace->vertices.coord[(size_t)4 * i + 1];
              z1 = meshFace->vertices.coord[(size_t)4 * i + 2];
              x2 = mesh->vertices.coord[(size_t)4 * nodeGlobal + 0];
              y2 = mesh->vertices.coord[(size_t)4 * nodeGlobal + 1];
              z2 = mesh->vertices.coord[(size_t)4 * nodeGlobal + 2];
              if(!isPoint(x1, y1, z1, x2, y2, z2, 1e-12)) {
                printf("Mismatch : (%10.12e,%10.12e,%10.12e) - "
                       "(%10.12e,%10.12e,%10.12e)\n",
                       x1, y1, z1, x2, y2, z2);
              }
              assert(isPoint(x1, y1, z1, x2, y2, z2, 1e-15));
            }

            nodalCurvature[6 * nodeGlobal + 0] = curv[i].first[0];
            nodalCurvature[6 * nodeGlobal + 1] = curv[i].first[1];
            nodalCurvature[6 * nodeGlobal + 2] = curv[i].first[2];
            nodalCurvature[6 * nodeGlobal + 3] = curv[i].second[0];
            nodalCurvature[6 * nodeGlobal + 4] = curv[i].second[1];
            nodalCurvature[6 * nodeGlobal + 5] = curv[i].second[2];
          }

          nVertices += meshFace->vertices.num;
        }
      } // for faces.size()

      debug = true;
      if(debug)
        writeNodalCurvature(nodalCurvature, mesh->vertices.num,
                            "nodalCurvature.txt");

      // Compute Delaunay tetrahedrization of the (empty) surface mesh
      HXTDelaunayOptions delaunayOptions = {nullptr, nullptr, 0, 0, 0, 2, 1, 0};
      HXT_CHECK(hxtEmptyMesh(mesh, &delaunayOptions));

      // Compute normal vectors
      std::vector<int> tris(3 * mesh->triangles.num, 0);
      for(std::size_t i = 0; i < mesh->triangles.num; ++i) {
        tris[3 * i + 0] = mesh->triangles.node[3 * i + 0];
        tris[3 * i + 1] = mesh->triangles.node[3 * i + 1];
        tris[3 * i + 2] = mesh->triangles.node[3 * i + 2];
      }

      std::vector<SPoint3> nodes(mesh->vertices.num);
      for(size_t i = 0; i < mesh->vertices.num; ++i) {
        nodes[i] = SPoint3(mesh->vertices.coord[(size_t)4 * i + 0],
                           mesh->vertices.coord[(size_t)4 * i + 1],
                           mesh->vertices.coord[(size_t)4 * i + 2]);
      }

      std::vector<std::pair<SVector3, SVector3> > curv;
      nodeNormals.reserve(3 * mesh->vertices.num);

      // Same function but returns the normals
      CurvatureRusinkiewicz(tris, nodes, curv, nodeNormals);

      // Add bboxes of the surface mesh to rtree
      HXTBbox bbox_triangle;
      for(uint64_t i = 0; i < mesh->triangles.num; ++i) {
        hxtBboxInit(&bbox_triangle);
        for(uint64_t j = 0; j < 3; ++j) {
          double coord[3];
          uint32_t node = mesh->triangles.node[3 * i + j];
          for(uint32_t k = 0; k < 3; ++k) {
            coord[k] = mesh->vertices.coord[(size_t)4 * node + k];
          }
          hxtBboxAddOne(&bbox_triangle, coord);
        }
        SBoundingBox3d cube_bbox(bbox_triangle.min[0], bbox_triangle.min[1],
                                 bbox_triangle.min[2], bbox_triangle.max[0],
                                 bbox_triangle.max[1], bbox_triangle.max[2]);
        // cube_bbox.makeCube();
        triRTree.Insert((double *)(cube_bbox.min()),
                        (double *)(cube_bbox.max()), i);
      }

      // Compute bbox of the mesh
      HXTBbox bbox_mesh;
      hxtBboxInit(&bbox_mesh);
      hxtBboxAdd(&bbox_mesh, mesh->vertices.coord, mesh->vertices.num);
      for(int i = 0; i < 3; ++i) {
        bbox_vertices[i] = bbox_mesh.min[i];
        bbox_vertices[i + 3] = bbox_mesh.max[i];
      }

      // Export RTree in .pos file
      bool exportRTree = false;
      if(exportRTree) {
        RTree<uint64_t, double, 3>::Iterator it;
        FILE *f = fopen("rtree.pos", "w");
        fprintf(f, "View \"sizeField\" {\n");
        int itIndex = 0;
        double s = 1.0;
        double x[8], y[8], z[8];
        // Using custom GetNext2 to display intermediary rectangles
        for(triRTree.GetFirst(it); !triRTree.IsNull(it);
            triRTree.GetNext2(it)) {
          int value = triRTree.GetAt(it);
          double boundsMin[3] = {0, 0, 0};
          double boundsMax[3] = {0, 0, 0};
          it.GetBounds(boundsMin, boundsMax);
          std::cout << "it[" << itIndex++ << "] " << value << " = ("
                    << boundsMin[0] << "," << boundsMin[1] << ","
                    << boundsMin[2] << "," << boundsMax[0] << ","
                    << boundsMax[1] << "," << boundsMax[2] << ")\n";
          x[0] = x[3] = x[4] = x[7] = boundsMin[0];
          x[1] = x[2] = x[5] = x[6] = boundsMax[0];
          y[0] = y[1] = y[4] = y[5] = boundsMin[1];
          y[2] = y[3] = y[6] = y[7] = boundsMax[1];
          z[0] = z[1] = z[2] = z[3] = boundsMin[2];
          z[4] = z[5] = z[6] = z[7] = boundsMax[2];
          fprintf(f,
                  "SH(%f,%f,%f, %f,%f,%f, %f,%f,%f, %f,%f,%f, %f,%f,%f, "
                  "%f,%f,%f, %f,%f,%f, %f,%f,%f){%f,%f,%f,%f,%f,%f,%f,%f};\n",
                  x[0], y[0], z[0], x[1], y[1], z[1], x[2], y[2], z[2], x[3],
                  y[3], z[3], x[4], y[4], z[4], x[5], y[5], z[5], x[6], y[6],
                  z[6], x[7], y[7], z[7], s, s, s, s, s, s, s, s);
        }
        // Adding the root rectangle (the bbox)
        x[0] = x[3] = x[4] = x[7] = bbox_mesh.min[0];
        x[1] = x[2] = x[5] = x[6] = bbox_mesh.max[0];
        y[0] = y[1] = y[4] = y[5] = bbox_mesh.min[1];
        y[2] = y[3] = y[6] = y[7] = bbox_mesh.max[1];
        z[0] = z[1] = z[2] = z[3] = bbox_mesh.min[2];
        z[4] = z[5] = z[6] = z[7] = bbox_mesh.max[2];
        fprintf(f,
                "SH(%f,%f,%f, %f,%f,%f, %f,%f,%f, %f,%f,%f, %f,%f,%f, "
                "%f,%f,%f, %f,%f,%f, %f,%f,%f){%f,%f,%f,%f,%f,%f,%f,%f};\n",
                x[0], y[0], z[0], x[1], y[1], z[1], x[2], y[2], z[2], x[3],
                y[3], z[3], x[4], y[4], z[4], x[5], y[5], z[5], x[6], y[6],
                z[6], x[7], y[7], z[7], s, s, s, s, s, s, s, s);
        fprintf(f, "};");
        fclose(f);
      }
    }

    if(dim == 2) {
      Msg::Error("2D size field is not yet operational");

      SBoundingBox3d bbox = GModel::current()->bounds();
      for(int i = 0; i < 3; ++i) {
        bbox_vertices[i] = bbox.min()[i];
        bbox_vertices[i + 3] = bbox.max()[i];
      }

      mesh = nullptr;

      // for(auto it = GModel::current()->firstEdge(); it !=
      // GModel::current()->lastEdge(); ++it){
      //   GEdge *e = *it;
      //   curvFunctions.push_back([e](double par){ return e->curvature(par);
      //   }); xFunctions.push_back([e](double par){ return e->point(par).x();
      //   }); yFunctions.push_back([e](double par){ return e->point(par).y();
      //   });
      // }

      // forestOptions->curvFunctions = &curvFunctions;
      // forestOptions->xFunctions = &xFunctions;
      // forestOptions->yFunctions = &yFunctions;
    }

    // Set the bulk size and the min size from the bbox
    if(_hbulk < 0 || _hmin < 0) {
      double L = -1.0;
      for(int i = 0; i < 3; ++i) {
        L = fmax(L, bbox_vertices[i + 3] - bbox_vertices[i]);
      }
      _hbulk < 0 ? _hbulk = L / 20. : _hbulk;
      _hmin < 0 ? _hmin = L / 1000. : _hmin;
      Msg::Info("Bulk size is set to %f", _hbulk);
      Msg::Info("Min  size is set to %f", _hmin);
    }

    if(_hmax < 0) _hmax = _hbulk;

    std::vector<double> sizeAtVertices(mesh->vertices.num, DBL_MAX);

    forestOptions->dim = dim;
    forestOptions->hmax = _hmax;
    forestOptions->hmin = _hmin;
    forestOptions->hbulk = _hbulk;
    forestOptions->gradation = _gradation;
    forestOptions->nodePerTwoPi = _nPointsPerCircle;
    forestOptions->nodePerGap = _nPointsPerGap;
    forestOptions->bbox = bbox_vertices;
    forestOptions->sizeFunction = nullptr;
    forestOptions->nodalCurvature = nodalCurvature;
    forestOptions->nodeNormals = &nodeNormals[0];
    forestOptions->featureSizeAtVertices = &sizeAtVertices;
    forestOptions->triRTree = (dim == 3) ? &triRTree : nullptr;
    forestOptions->mesh = mesh;

    HXT_CHECK(forestCreate(0, nullptr, &forest, nullptr, forestOptions));

    if(dim == 3) {
      if(_nPointsPerGap > 0) {
        Msg::Info("Detecting features...");
        HXT_CHECK(featureSize(forest));
      }

      if(_nPointsPerCircle > 0) {
        Msg::Info("Refining octree...");
        HXT_CHECK(forestRefine(forest));
      }

      if(_smoothing) {
        Msg::Info("Smoothing size gradient...");
        HXT_CHECK(forestSizeSmoothing(forest));
      }

      double elemEstimation;
      HXT_CHECK(hxtOctreeElementEstimation(forest, &elemEstimation));
      Msg::Info("Estimated number of tetrahedra in the bounding box : %ld",
                (uint64_t)ceil(elemEstimation));
    }
    else {
      HXT_CHECK(forestRefine(forest));
      if(_smoothing) {
        Msg::Info("Smoothing size gradient...");
        HXT_CHECK(forestSizeSmoothing(forest));
      }
    }

    // forestInterpolateDirections(forest);

    // Save forest in .p4est file
    std::string forestFile = GModel::current()->getName() + ".p4est";
    std::string dataFile = GModel::current()->getName() + ".data";
    Msg::Info("Saving size field in %s", forestFile.c_str());
    HXT_CHECK(forestSave(forest, forestFile.c_str(), dataFile.c_str()));

    debug = false;
    if(debug) {
      // Export size field in .pos file
      forestFile = GModel::current()->getName() + ".pos";
      HXT_CHECK(forestExport(forest, forestFile.c_str()));
    }

    if(dim == 3) {
      if(nodalCurvature) HXT_CHECK(hxtFree(&nodalCurvature));
      // if(nodeNormals)    HXT_CHECK(hxtFree(&nodeNormals));
      HXT_CHECK(hxtMeshDelete(&mesh));
    }
  }

  return HXT_STATUS_OK;
}

#endif

void automaticMeshSizeField::update()
{
#if defined(HAVE_HXT) && defined(HAVE_P4EST)
  HXTStatus s = updateHXT();
  if(s != HXT_STATUS_OK)
    Msg::Error("Something went wrong when computing the octree");
#else
  Msg::Error(
    "Gmsh has to be compiled with HXT and P4EST to use automaticMeshSizeField");
#endif
};
